Hg_chrom8_TN10mRNA_15157
Organism: Heterodera glycines Gene Locus: chr8:2478499-2480524 Feature type: polypeptideProtein Sequence
Length: 373
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.686 | 1.247 | 1.316 | 0.647 | 0.938 | 1.169 | 0.67 | 1.743 | 0.775 | 1.449 | 0.691 | 2.05 | 1.862 | 0.928 | 1.149 | 0.843 | 0.791 | 1.056 | 0.412 | 0.789 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14307
|
— | — |
0.778
|
1.000
|
— |
1.000
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
LGEV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.442
|
0.214
|
0.042
|
0.489
|
0.065
|
0.115
|
0.116
|
0.126
|
0.133
|
0.069
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002449
|
3.000
|
1.000
|
Hsc_gene_2865.t1
|
Hsc_gene_2865.t1
|
— | — |
KAI3421329.1 hypothetical protein GPALN_014948 [Globodera pallida]
|
EJW03611
|
0.470
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.946|GO:0009987_0.892|GO:0005575_0.883|GO:0110165_0.875|GO:0003674_0.872|GO:0065007_0.834|GO:0005622_0.831|GO:0008152_0.821|GO:0050789_0.817|GO:0050794_0.800|GO:0044238_0.794|GO:0044237_0.789|GO:0009058_0.788|GO:0005488_0.778|GO:0005737_0.778|GO:0043170_0.763|GO:0044249_0.759|GO:0003824_0.754|GO:0009059_0.741|GO:0071840_0.739|GO:0051179_0.737|GO:0019222_0.736|GO:0006139_0.734|GO:0016043_0.734|GO:0019538_0.734|GO:0048519_0.734|GO:0031323_0.730|GO:0010467_0.729|GO:0080090_0.725|GO:0048523_0.720|GO:0060255_0.720|GO:0090304_0.714|GO:0009889_0.711|GO:0010556_0.711|GO:0031326_0.711|GO:0009056_0.708|GO:0010468_0.708|GO:0016070_0.706|GO:0051641_0.705|GO:0043412_0.702|GO:0036211_0.700|GO:0006996_0.698|GO:0016787_0.693|GO:0009892_0.691|GO:0033036_0.691|GO:0009057_0.690|GO:0051246_0.690|GO:0070727_0.690|GO:0097159_0.690|GO:0010605_0.688|GO:0031324_0.688|GO:0051128_0.688|GO:0009890_0.683|GO:0010558_0.683|GO:0031327_0.683|GO:0043933_0.680|GO:0006259_0.679|GO:0043687_0.679|GO:0070647_0.679|GO:0006412_0.678|GO:0006414_0.678|GO:0010629_0.678|GO:0016567_0.678|GO:0032446_0.678|GO:0010608_0.677|GO:0016071_0.677|GO:0034655_0.677|GO:0003676_0.676|GO:0006325_0.676|GO:0006338_0.675|GO:0006401_0.675|GO:0040029_0.675|GO:0141188_0.675|GO:0006417_0.674|GO:0051276_0.674|GO:0006402_0.673|GO:0000184_0.670|GO:0000956_0.670|GO:0006310_0.670|GO:0006403_0.670|GO:0006415_0.670|GO:0006449_0.670|GO:0008298_0.670|GO:0022411_0.670|GO:0030466_0.670|GO:0031507_0.670|GO:0032392_0.670|GO:0032508_0.670|GO:0032984_0.670|GO:0043244_0.670|GO:0045814_0.670|GO:0070478_0.670|GO:0071103_0.670|GO:0140719_0.670|GO:0003723_0.664|GO:0003677_0.661|GO:0044877_0.660|GO:0016817_0.659|GO:0140640_0.659|GO:0016462_0.658|GO:0016818_0.658|GO:0017111_0.657|GO:0140098_0.656|GO:0016887_0.655|GO:0140657_0.655|GO:0140097_0.654|GO:0003678_0.650|GO:0003697_0.650|GO:0003724_0.650|GO:0003729_0.650|GO:0004386_0.650|GO:0008094_0.650|GO:0008186_0.650|GO:0036121_0.650|GO:0043021_0.650|GO:0043022_0.650|GO:0043024_0.650
|
IPR027417+194-327+|IPR041679+248-312+|IPR050534+240-321+
|
— |
PF13087+248-312+AAA_domain
|
— |
PTHR43788+240-321+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-373
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.504
|
42470.370
|
6.044
|
-3.500
|
26.542
|
13.405
|
47.185
|
52.815
|
13.673
|
12.869
|
48.525
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
53.383
|
0.000
|
0.892
|
1.057
|
1.000
|
4.423
|
0.816
|
2.179
|
0.000
|
229.660
|
131.234
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
4.508
|
— | — | — |
-2.429
|
— | — |
-8.680
|
— |
-7.528
|
— | — |
No JSON data available for plots.