Hg_chrom8_TN10mRNA_15159
Organism: Heterodera glycines Gene Locus: chr8:2510672-2512531 Feature type: polypeptideProtein Sequence
Length: 387
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.352 | 1.202 | 0.94 | 1.247 | 0.775 | 0.663 | 0.769 | 1.55 | 1.263 | 1.711 | 0.392 | 1.672 | 1.364 | 0.646 | 1.16 | 0.701 | 0.974 | 0.979 | 1.193 | 0.304 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14309
|
— | — |
1.667
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— | — | — | — | — | — | — | — |
0.001
|
— | — |
0.400
|
0.399
|
0.016
|
0.400
|
0.104
|
0.087
|
0.177
|
0.079
|
0.136
|
0.482
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001997
|
3.000
|
1.000
|
Hsc_gene_25640.t1
|
Hsc_gene_1904.t1;Hsc_gene_23807.t1
|
— | — |
MEE8130504.1 ankyrin repeat domain-containing protein [Vicinamibacterales bacterium]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
— |
IPR002110+103-132_143-172_143-175_151-241_176-205_176-208_209-239_244-274_250-323_278-307_278-310+|IPR036770+51-218_67-323_219-327+
|
SM00248+103-132_143-172_176-205_209-239_244-274_278-307+
|
PF12796+151-241_250-323+Ankyrin_repeats_(3_copies)
|
— |
PTHR24178+105-235+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-387
|
4hll_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.498
|
42404.100
|
6.486
|
0.000
|
21.189
|
10.594
|
39.793
|
60.207
|
11.370
|
9.819
|
52.713
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
207.340
|
4.349
|
9.578
|
22.341
|
39.426
|
300.541
|
31.474
|
364.703
|
0.000
|
617.459
|
352.834
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.224
|
1.330
|
0.788
|
2.946
|
-3.240
|
— |
-3.381
|
-10.074
|
5.339
|
— | — | — |
No JSON data available for plots.