Hg_chrom8_TN10mRNA_15162
Organism: Heterodera glycines Gene Locus: chr8:2524993-2525903 Feature type: polypeptideProtein Sequence
Length: 156
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.745 | 1.193 | 0.932 | 0.663 | 0.855 | 1.315 | 0.763 | 1.603 | 1.425 | 1.386 | 1.263 | 1.885 | 1.068 | 0.37 | 0.916 | 1.099 | 0.946 | 1.166 | 0.493 | 0.377 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14312
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.980
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.343
|
0.302
|
0.042
|
0.719
|
0.284
|
0.150
|
0.219
|
0.058
|
0.281
|
0.116
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004701
|
1.000
|
2.000
|
Hsc_gene_13319.t1;Hsc_gene_1912.t1
|
— | — | — |
KAF7640015.1 Calponin-homology, partial [Meloidogyne graminicola]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.784|GO:0005575_0.725|GO:0110165_0.714|GO:0005622_0.683|GO:0009987_0.672|GO:0043226_0.569|GO:0043229_0.562
|
IPR001715+24-147_26-123_29-120+|IPR003096+3-17_22-35_52-67_86-102_102-117+|IPR036872+18-126_19-121+|IPR050606+1-120+
|
SM00033+26-123+
|
PF00307+29-120+Calponin_homology_(CH)_domain
|
— |
PTHR47385+1-120+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-156
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.807
|
17375.090
|
9.192
|
6.500
|
26.282
|
8.974
|
50.000
|
50.000
|
16.026
|
10.256
|
48.077
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
95.959
|
23.812
|
44.838
|
335.281
|
39.323
|
6.356
|
14.184
|
570.982
|
0.000
|
31.779
|
18.160
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.682
|
3.679
|
3.015
|
-3.128
|
-2.614
|
1.169
|
6.383
|
-5.189
|
— |
9.246
|
— | — | — |
No JSON data available for plots.