Hg_chrom8_TN10mRNA_15163
Organism: Heterodera glycines Gene Locus: chr8:2526714-2528929 Feature type: polypeptideProtein Sequence
Length: 179
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.78 | 1.299 | 0.508 | 1.156 | 1.117 | 1.576 | 1.064 | 0.559 | 1.117 | 1.434 | 1.016 | 1.972 | 0.931 | 0.43 | 0.912 | 1.117 | 1.007 | 1.016 | 0.859 | 0.329 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14313
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.387
|
0.257
|
0.102
|
0.757
|
0.173
|
0.117
|
0.249
|
0.017
|
0.424
|
0.040
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011799
|
1.000
|
1.000
|
Hsc_gene_1911.t1
|
— | — | — |
KAF7640015.1 Calponin-homology, partial [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.876|GO:0009987_0.777|GO:0005575_0.714|GO:0110165_0.712|GO:0005622_0.639|GO:0065007_0.551|GO:0050789_0.537|GO:0050794_0.520|GO:0005737_0.512|GO:0043226_0.501
|
IPR001715+24-134_26-129_27-133+|IPR003096+3-17_22-35_51-66_85-101_101-116+|IPR036872+10-143_19-135+|IPR050606+5-137+
|
SM00033+26-129+
|
PF00307+27-133+Calponin_homology_(CH)_domain
|
— |
PTHR47385+5-137+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-179
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.848
|
19586.570
|
8.241
|
4.000
|
21.788
|
6.704
|
47.486
|
52.514
|
12.291
|
9.497
|
50.279
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
9515.660
|
16167.681
|
25132.797
|
10927.916
|
1997.600
|
2875.982
|
371.464
|
37047.084
|
1861.164
|
4789.942
|
3534.751
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.409
|
-0.703
|
-1.094
|
-2.484
|
0.540
|
-2.942
|
3.588
|
-6.498
|
— |
2.662
|
— | — | — |
No JSON data available for plots.