Hg_chrom8_TN10mRNA_15167
Organism: Heterodera glycines Gene Locus: chr8:2539164-2540129 Feature type: polypeptideProtein Sequence
Length: 183
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.318 | 2.923 | 0.894 | 0.188 | 1.184 | 0.56 | 0.52 | 0.82 | 1.214 | 0.96 | 1.904 | 1.286 | 2.429 | 0.525 | 0.335 | 2.03 | 0.717 | 0.414 | 0.841 | 0.321 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14317
|
— | — |
2.111
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
4.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
chloroplast
|
— | — | — |
42-62
|
0.980
|
— |
0.891
|
0.477
|
0.000
|
— |
0.322
|
0.304
|
0.015
|
0.508
|
0.164
|
0.355
|
0.233
|
0.061
|
0.189
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000919
|
3.000
|
3.000
|
Hsc_gene_1889.t1;Hsc_gene_1903.t1;Hsc_gene_1903.t2
|
Hsc_gene_1903.t1;Hsc_gene_1903.t2
|
— | — |
KAI3416231.1 hypothetical protein GPALN_005776 [Globodera pallida]
|
WP_085592166
|
0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
73-131
|
2.000
|
1-72;132-183
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.977
|
20847.320
|
9.656
|
5.500
|
27.869
|
12.568
|
61.202
|
38.798
|
15.847
|
12.022
|
49.180
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
pink
|
19.409
|
0.841
|
0.601
|
0.260
|
0.660
|
0.000
|
0.201
|
0.279
|
4.112
|
80.765
|
47.913
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
-4.406
|
— |
-6.813
|
— | — |