Hg_chrom8_TN10mRNA_15170
Organism: Heterodera glycines Gene Locus: chr8:2546226-2548141 Feature type: polypeptideProtein Sequence
Length: 359
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.972 | 1.684 | 1.367 | 1.153 | 1.161 | 0.929 | 0.73 | 1.114 | 0.99 | 0.866 | 1.266 | 0.819 | 0.851 | 1.178 | 0.966 | 1.273 | 0.411 | 0.717 | 0.429 | 0.983 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14320
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
KANGKGKKKVARKRRA
|
— | — | — | — |
1-24
|
0.982
|
1.000
|
0.000
|
0.000
|
0.346
|
0.222
|
0.036
|
0.310
|
0.105
|
0.016
|
0.078
|
0.126
|
0.074
|
0.880
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002472
|
1.000
|
3.000
|
Hsc_gene_1886.t1;Hsc_gene_1886.t2;Hsc_gene_22782.t1
|
Hsc_gene_1886.t1;Hsc_gene_1886.t2;Hsc_gene_22779.t1;Hsc_gene_22782.t1
|
— | — |
KAI1701598.1 chitin binding peritrophin-A domain-containing protein [Ditylenchus destructor]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005576|GO:0008061
|
GO:0008150_0.948|GO:0005575_0.915|GO:0110165_0.915|GO:0009987_0.879|GO:0065007_0.867|GO:0050789_0.856|GO:0050794_0.842|GO:0032502_0.800|GO:0048856_0.800|GO:0030154_0.745|GO:0048869_0.745|GO:0071944_0.742|GO:0048468_0.737|GO:0009653_0.711|GO:0022414_0.697|GO:0003006_0.690|GO:0048646_0.688|GO:0019953_0.685|GO:0048609_0.681|GO:0007276_0.680|GO:0022412_0.677|GO:0007281_0.676|GO:0007292_0.675|GO:0048477_0.675|GO:0030703_0.670|GO:0003674_0.522
|
IPR002557+34-90_35-90_37-88_104-158_105-158_107-155+|IPR036508+37-92_102-154+|IPR051940+36-156+
|
SM00494+35-90_105-158+
|
PF01607+37-88_107-155+Chitin_binding_Peritrophin-A_domain
|
— |
PTHR23301+36-156+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
156-271
|
2.000
|
1-155;272-359
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.799
|
39745.330
|
6.306
|
-1.000
|
29.805
|
9.192
|
52.089
|
47.911
|
15.320
|
14.485
|
54.875
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
skyblue
|
470.963
|
18.199
|
19.610
|
13.467
|
47.905
|
191.915
|
4888.190
|
176.219
|
0.000
|
52.147
|
29.798
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
1.796
|
2.017
|
4.681
|
— |
4.938
|
— |
4.608
|
— | — | — |