Hg_chrom8_TN10mRNA_15171
Organism: Heterodera glycines Gene Locus: chr8:2548386-2549424 Feature type: polypeptideProtein Sequence
Length: 182
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.278 | 1.533 | 0.799 | 0.758 | 0.549 | 0.986 | 1.374 | 0.549 | 1.099 | 0.817 | 1.332 | 0.97 | 1.068 | 0.317 | 0.673 | 1.02 | 1.171 | 0.999 | 2.536 | 0.485 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14321
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_1885;Hsc_gene_22780;Hsc_gene_22783;Hsc_gene_22789
|
— | — |
15-Male
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm|extracellular
|
— | — | — | — | — | — |
1-20
|
0.966
|
1.000
|
0.000
|
0.000
|
0.207
|
0.502
|
0.027
|
0.697
|
0.190
|
0.169
|
0.293
|
0.215
|
0.195
|
0.760
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001415
|
2.000
|
3.000
|
Hsc_gene_1885.t1;Hsc_gene_22780.t1;Hsc_gene_22783.t1
|
Hsc_gene_1880.t1;Hsc_gene_1880.t2;Hsc_gene_1885.t1;Hsc_gene_22780.t1;Hsc_gene_22783.t1;Hsc_gene_22789.t2
|
— |
Q5ATC7.1 Pectate lyase H [Aspergillus nidulans FGSC A4]
|
ADW77533.1 pectate lyase [Heterodera glycines]
|
MER6349840
|
0.230
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005576|GO:0030570
|
GO:0008150_0.899|GO:0003674_0.843|GO:0008152_0.773|GO:0044238_0.746|GO:0003824_0.743|GO:0043170_0.715|GO:0009056_0.696|GO:0005975_0.684|GO:0009057_0.681|GO:0005976_0.680|GO:0000272_0.670|GO:0010393_0.670|GO:0016052_0.670|GO:0045488_0.670|GO:0045490_0.670|GO:0016829_0.660|GO:0016835_0.655|GO:0016837_0.650|GO:0030570_0.650
|
IPR004898+21-156_74-152+|IPR011050+30-155+|IPR012334+19-177+
|
— |
PF03211+21-156+Pectate_lyase
|
— |
PTHR33407+74-152+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-182
|
1ee6_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.892
|
19495.120
|
9.933
|
9.000
|
20.879
|
9.890
|
45.604
|
54.396
|
13.187
|
7.692
|
58.242
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
2441.030
|
4.767
|
489.346
|
104.597
|
21.372
|
822.323
|
1356.209
|
18077.373
|
3569.769
|
173.684
|
1629.149
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.457
|
4.322
|
-2.116
|
-2.323
|
5.278
|
0.735
|
4.362
|
-3.595
|
4.239
|
-4.923
|
— | — | — |