Hg_chrom8_TN10mRNA_15176
Organism: Heterodera glycines Gene Locus: chr8:2581987-2583891 Feature type: polypeptideProtein Sequence
Length: 497
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.655 | 1.17 | 0.878 | 0.416 | 1.844 | 1.599 | 0.647 | 0.604 | 0.224 | 0.435 | 1.341 | 0.118 | 0.335 | 5.572 | 0.657 | 0.23 | 0.462 | 0.579 | 0.155 | 1.243 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14326
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.598
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
KRRP,KKPKGGAEDQADPKKKPD,PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
|
— | — | — | — |
1-18
|
0.985
|
1.000
|
0.000
|
0.000
|
0.186
|
0.218
|
0.022
|
0.382
|
0.076
|
0.052
|
0.052
|
0.070
|
0.178
|
0.926
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004702
|
1.000
|
2.000
|
Hsc_gene_1881.t1;Hsc_gene_22788.t1
|
— | — | — |
KAI6242957.1 Chitin binding domain-containing protein [Aphelenchoides fujianensis]
|
No
|
-0.350
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005576|GO:0008061
|
— |
IPR002557+91-152_92-152_94-150+|IPR036508+89-161+
|
SM00494+92-152+
|
PF01607+94-150+Chitin_binding_Peritrophin-A_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-497
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.946
|
54801.020
|
4.750
|
-16.000
|
29.175
|
6.841
|
44.869
|
55.131
|
13.280
|
15.895
|
59.356
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
skyblue
|
1165.721
|
4.754
|
11.439
|
7.373
|
3.703
|
1119.169
|
11885.837
|
206.317
|
42.707
|
103.526
|
77.461
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.041
|
— | — | — |
8.248
|
3.422
|
-2.563
|
6.000
|
— | — | — | — | — |