Hg_chrom8_TN10mRNA_15177
Organism: Heterodera glycines Gene Locus: chr8:2585817-2586976 Feature type: polypeptideProtein Sequence
Length: 180
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.163 | 1.163 | 0.808 | 0.766 | 0.648 | 1.425 | 1.587 | 0.833 | 1.111 | 0.826 | 1.178 | 1.307 | 1.389 | 0.427 | 0.68 | 0.714 | 1.184 | 0.926 | 1.709 | 0.49 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14327
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_1885;Hsc_gene_19177;Hsc_gene_22780;Hsc_gene_22789
|
— | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide|nuclear_localization_signal
|
nucleus|extracellular
|
— | — | — | — | — | — |
1-20
|
0.985
|
1.000
|
0.000
|
0.000
|
0.502
|
0.167
|
0.032
|
0.377
|
0.257
|
0.098
|
0.194
|
0.011
|
0.467
|
0.942
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001415
|
2.000
|
3.000
|
Hsc_gene_1885.t1;Hsc_gene_22780.t1;Hsc_gene_22783.t1
|
Hsc_gene_1880.t2;Hsc_gene_22789.t2
|
— |
Q5BA88.1 Probable pectate lyase D [Aspergillus nidulans FGSC A4]
|
ADW77533.1 pectate lyase [Heterodera glycines]
|
WP_194077868
|
0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005576|GO:0030570
|
GO:0008150_0.908|GO:0003674_0.863|GO:0008152_0.778|GO:0003824_0.765|GO:0044238_0.752|GO:0043170_0.725|GO:0009056_0.701|GO:0005975_0.685|GO:0009057_0.683|GO:0005976_0.681|GO:0000272_0.674|GO:0016052_0.674|GO:0010393_0.670|GO:0045488_0.670|GO:0045490_0.670|GO:0016829_0.661|GO:0016835_0.656|GO:0016837_0.650|GO:0030570_0.650
|
IPR004898+21-166_74-152+|IPR011050+31-153+|IPR012334+19-175+
|
— |
PF03211+21-166+Pectate_lyase
|
— |
PTHR33407+74-152+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-180
|
1ee6_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.907
|
19278.900
|
9.203
|
6.500
|
21.111
|
10.556
|
43.889
|
56.111
|
12.778
|
8.333
|
55.556
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkgreen
|
18738.078
|
13.192
|
4411.390
|
888.539
|
91.987
|
43.451
|
88.269
|
1292.705
|
105817.924
|
54.573
|
45381.723
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
8.158
|
5.936
|
-2.202
|
-3.303
|
-1.070
|
1.039
|
4.799
|
-3.729
|
10.826
|
-6.762
|
— | — | — |