Hg_chrom8_TN10mRNA_15178
Organism: Heterodera glycines Gene Locus: chr8:2601258-2607254 Feature type: polypeptideProtein Sequence
Length: 682
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.784 | 0.852 | 0.933 | 0.354 | 0.88 | 1.015 | 1.03 | 1.76 | 0.782 | 1.129 | 0.755 | 1.725 | 1.263 | 1.269 | 1.496 | 1.005 | 0.937 | 0.711 | 2.594 | 0.863 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14328
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.513
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RKGWTHIGGRMKKLAR,RKSAGGSASKDKRKREKERERRAQRG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.131
|
0.216
|
0.024
|
0.257
|
0.282
|
0.213
|
0.276
|
0.011
|
0.621
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011802
|
1.000
|
1.000
|
Hsc_gene_1878.t1
|
Hsc_gene_1878.t1
|
— | — |
KAF7634722.1 Innexin [Meloidogyne graminicola]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.972|GO:0065007_0.919|GO:0050789_0.895|GO:0032501_0.862|GO:0005575_0.769|GO:0110165_0.769|GO:0051239_0.731|GO:0009987_0.719|GO:0003674_0.694|GO:0051179_0.605|GO:0032502_0.601|GO:0048856_0.601|GO:0006810_0.589|GO:0051234_0.589|GO:0030054_0.571|GO:0007275_0.564|GO:0048518_0.551|GO:0016020_0.533|GO:0071944_0.528|GO:0055085_0.516|GO:0005886_0.508|GO:0009653_0.503
|
IPR000990+33-420_90-412_90-422+
|
— |
PF00876+90-412+Innexin
|
— |
PTHR11893+90-422+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
426-682
|
1.000
|
1-425
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.885
|
77386.750
|
9.498
|
25.000
|
26.246
|
14.370
|
46.628
|
53.372
|
15.836
|
10.411
|
49.267
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
719.359
|
986.329
|
879.973
|
495.621
|
721.611
|
1251.793
|
1612.451
|
791.482
|
465.347
|
270.961
|
354.269
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.393
|
-1.130
|
-0.720
|
0.510
|
0.810
|
0.375
|
-0.763
|
1.167
|
— | — | — | — | — |
No JSON data available for plots.