Hg_chrom8_TN10mRNA_15179
Organism: Heterodera glycines Gene Locus: chr8:2610614-2612860 Feature type: polypeptideProtein Sequence
Length: 283
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.74 | 1.315 | 1.221 | 0.122 | 1.296 | 0.815 | 0.631 | 0.707 | 1.57 | 1.624 | 1.713 | 1.663 | 2.061 | 0.476 | 0.865 | 0.757 | 0.869 | 0.428 | 0.0 | 0.727 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14329
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_1877
|
— | — |
18-Not_Clustered
|
0.527
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
nucleus
|
RKGPSGVLGRLIKKAIK
|
— | — | — | — |
1-19
|
0.963
|
0.999
|
0.000
|
0.000
|
0.498
|
0.348
|
0.144
|
0.547
|
0.415
|
0.362
|
0.218
|
0.060
|
0.268
|
0.370
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011803
|
1.000
|
1.000
|
Hsc_gene_1877.t1
|
Hsc_gene_1877.t1
|
— |
Q9VXG4.2 Annexin B11 [Drosophila melanogaster]
|
KHJ86219.1 Annexin [Oesophagostomum dentatum]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509|GO:0005544
|
GO:0005575_0.901|GO:0110165_0.899|GO:0016020_0.788|GO:0005622_0.764|GO:0043226_0.726|GO:0008150_0.713|GO:0003674_0.686|GO:0005737_0.675|GO:0043227_0.673|GO:0043229_0.656|GO:0009987_0.633|GO:0071944_0.633|GO:0005488_0.612|GO:0043231_0.595|GO:0005886_0.556
|
IPR001464+59-80_142-168_251-266+|IPR018502+50-121_54-119_69-119_133-205_137-201_151-203+|IPR037104+21-281_52-126_127-208+
|
SM00335+69-119_151-203+
|
PF00191+54-119_137-201+Annexin
|
G3DSA:1.10.220.10:FF:000002+124-209+Annexin
|
PTHR10502+49-281+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-283
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.646
|
32475.510
|
9.090
|
5.000
|
31.449
|
11.307
|
50.883
|
49.117
|
16.961
|
14.488
|
40.283
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
327.498
|
16.509
|
287.394
|
82.628
|
198.151
|
749.013
|
143.547
|
807.768
|
6.522
|
571.032
|
329.099
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.892
|
2.186
|
-1.691
|
1.230
|
1.933
|
-2.376
|
— |
-2.362
|
— | — | — | — | — |