Hg_chrom8_TN10mRNA_15180
Organism: Heterodera glycines Gene Locus: chr8:2614586-2617461 Feature type: polypeptideProtein Sequence
Length: 354
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.657 | 0.788 | 0.103 | 0.292 | 0.847 | 0.652 | 0.908 | 1.13 | 2.323 | 1.68 | 0.685 | 3.157 | 2.354 | 0.706 | 0.519 | 1.291 | 1.111 | 0.813 | 0.435 | 0.831 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14330
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.075
|
0.055
|
0.018
|
0.116
|
0.327
|
0.357
|
0.237
|
0.009
|
0.684
|
0.148
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004703
|
1.000
|
2.000
|
Hsc_gene_1876.t1;Hsc_gene_1876.t2
|
Hsc_gene_1876.t2
|
— | — |
KAK6062115.1 transporter, major facilitator family protein [Cooperia oncophora]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0022857|GO:0055085
|
GO:0005575_0.932|GO:0110165_0.932|GO:0016020_0.746|GO:0008150_0.722|GO:0005886_0.697|GO:0071944_0.697|GO:0006810_0.668|GO:0051179_0.668|GO:0051234_0.668|GO:0005622_0.650|GO:0043226_0.636|GO:0005737_0.631|GO:0043229_0.620|GO:0043227_0.618|GO:0043231_0.594|GO:0005773_0.575|GO:0012505_0.544|GO:0071705_0.524|GO:0031090_0.505
|
IPR011701+30-341+|IPR020846+25-354+|IPR036259+19-211_25-338_247-348+|IPR050930+19-344+
|
— |
PF07690+30-341+Major_Facilitator_Superfamily
|
— |
PTHR23506+19-344+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-354
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.816
|
39356.810
|
9.205
|
9.000
|
14.972
|
14.124
|
36.723
|
63.277
|
9.322
|
5.650
|
42.938
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
darkred
|
235.403
|
23.131
|
30.030
|
7.760
|
443.066
|
431.802
|
57.689
|
78.714
|
0.514
|
627.433
|
358.753
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.713
|
-1.847
|
5.805
|
— |
-2.897
|
-2.557
|
— |
-9.607
|
— | — | — | — |
No JSON data available for plots.