Hg_chrom8_TN10mRNA_15183
Organism: Heterodera glycines Gene Locus: chr8:2634061-2638853 Feature type: polypeptideProtein Sequence
Length: 790
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.515 | 1.266 | 0.967 | 0.873 | 0.865 | 1.396 | 0.693 | 1.013 | 1.238 | 1.146 | 1.112 | 2.234 | 1.864 | 0.925 | 1.033 | 1.049 | 0.934 | 0.786 | 1.071 | 0.707 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14333
|
— | — |
1.111
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Not_Clustered
|
0.592
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
— | — | — | — | — | — |
1-21
|
0.973
|
1.000
|
0.000
|
0.000
|
0.384
|
0.247
|
0.073
|
0.465
|
0.400
|
0.171
|
0.162
|
0.047
|
0.140
|
0.073
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000920
|
1.000
|
5.000
|
Hsc_gene_1869.t1;Hsc_gene_1869.t2;Hsc_gene_21059.t1;Hsc_gene_21060.t1;Hsc_gene_21061.t1
|
Hsc_gene_1867.t1;Hsc_gene_1868.t1;Hsc_gene_1869.t1;Hsc_gene_1869.t2
|
— | — |
KAI3419387.1 Beta-1,3-galactosyltransferase 2 [Globodera pallida]
|
No
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR012444+449-561+|IPR029044+498-685_499-666+
|
— |
PF07801+449-561+Protein_of_unknown_function_(DUF1647)
|
— |
PTHR31389+439-732+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-790
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.831
|
90412.990
|
8.751
|
23.000
|
24.937
|
12.532
|
48.861
|
51.139
|
14.430
|
10.506
|
46.582
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
magenta
|
221.433
|
131.380
|
99.558
|
74.780
|
71.570
|
194.187
|
211.898
|
247.285
|
103.497
|
504.651
|
332.728
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.629
|
-0.950
|
-0.305
|
— |
1.455
|
— | — | — | — | — | — | — | — |