Hg_chrom8_TN10mRNA_15185
Organism: Heterodera glycines Gene Locus: chr8:2678862-2679540 Feature type: polypeptideProtein Sequence
Length: 165
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.268 | 1.268 | 1.102 | 0.418 | 1.313 | 1.865 | 0.433 | 0.606 | 0.943 | 1.147 | 1.928 | 2.139 | 1.178 | 0.583 | 0.618 | 0.693 | 0.497 | 0.918 | 0.932 | 0.535 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14335
|
— | — |
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — |
45D07|MT0123401#tn8jg10445t1
|
Hsc_gene_4396;Hsc_gene_4397
|
— | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.615
|
0.387
|
0.034
|
0.304
|
0.079
|
0.063
|
0.043
|
0.058
|
0.104
|
0.118
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001701
|
2.000
|
2.000
|
Hsc_gene_4396.t1;Hsc_gene_4397.t1
|
Hsc_gene_4396.t1
|
— | — |
AAO19577.2 chorismate mutase [Heterodera glycines]
|
WP_257564487
|
0.300
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046417
|
GO:0008150_0.910|GO:0009987_0.866|GO:0003674_0.814|GO:0008152_0.769|GO:0044237_0.759|GO:0044281_0.693|GO:0003824_0.685|GO:0006082_0.679|GO:0019752_0.679|GO:0043436_0.679|GO:0043648_0.670|GO:0046417_0.670|GO:0004106_0.650|GO:0016853_0.650|GO:0016866_0.650
|
IPR002701+1-62_1-63_2-60+|IPR008240+1-99+|IPR036263+2-145+|IPR036979+1-153+|IPR051331+2-72+
|
SM00830+1-62+
|
PF01817+2-60+Chorismate_mutase_type_II
|
— |
PTHR38041+2-72+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-165
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.635
|
18721.540
|
8.985
|
4.000
|
30.909
|
8.485
|
51.515
|
48.485
|
16.970
|
13.939
|
44.242
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
4834.465
|
102.778
|
3102.283
|
1606.200
|
432.274
|
56.075
|
72.194
|
260.586
|
18790.023
|
4946.118
|
10879.220
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.687
|
3.829
|
-0.842
|
-1.925
|
-2.932
|
— |
2.124
|
-1.715
|
— |
-3.440
|
-3.391
|
— | — |
No JSON data available for plots.