Hg_chrom8_TN10mRNA_15188
Organism: Heterodera glycines Gene Locus: chr8:2683778-2686787 Feature type: polypeptideProtein Sequence
Length: 344
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.71 | 1.014 | 0.793 | 0.601 | 1.114 | 1.267 | 1.246 | 2.18 | 1.357 | 1.139 | 0.44 | 0.342 | 1.211 | 0.503 | 1.305 | 0.872 | 0.905 | 1.145 | 2.46 | 0.94 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14338
|
— | — |
1.111
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.800
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.555
|
0.598
|
0.003
|
0.417
|
0.092
|
0.195
|
0.069
|
0.298
|
0.067
|
0.242
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011805
|
1.000
|
1.000
|
Hsc_gene_1865.t1
|
Hsc_gene_1865.t1
|
— |
O45307.2 D-aspartate oxidase 1 [Caenorhabditis elegans]
|
KAI1732150.1 FAD dependent oxidoreductase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003884|GO:0046416|GO:0071949
|
GO:0003674_0.781|GO:0008150_0.757|GO:0003824_0.698|GO:0009987_0.664|GO:0008152_0.596|GO:0005575_0.580|GO:0016491_0.580|GO:0110165_0.572|GO:0044238_0.564|GO:0044237_0.562|GO:0003884_0.547|GO:0008131_0.547|GO:0016638_0.547|GO:0016641_0.547|GO:0044281_0.505
|
IPR006076+3-329+|IPR006181+307-325+|IPR023209+1-339+
|
— |
PF01266+3-329+FAD_dependent_oxidoreductase
|
— |
PTHR11530+1-339+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-344
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.627
|
38716.540
|
6.661
|
1.500
|
24.709
|
15.116
|
45.640
|
54.360
|
13.663
|
11.047
|
48.837
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
342.812
|
158.177
|
209.355
|
214.675
|
284.006
|
345.427
|
567.107
|
231.786
|
368.265
|
469.655
|
426.202
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.304
|
— |
0.372
|
0.298
|
0.724
|
-0.685
|
1.434
|
— | — | — | — | — |
No JSON data available for plots.