Hg_chrom8_TN10mRNA_15189
Organism: Heterodera glycines Gene Locus: chr8:2687895-2702232 Feature type: polypeptideProtein Sequence
Length: 2,459
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.714 | 1.267 | 0.909 | 0.351 | 2.04 | 1.293 | 0.586 | 0.956 | 1.572 | 1.291 | 1.503 | 2.081 | 1.389 | 0.383 | 1.129 | 0.656 | 0.627 | 0.567 | 1.22 | 0.562 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14339
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.907
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRLMAHRSGTERHKKE,KKERRLKQRELQRMKEK,RKNGIFENKEQNGEKEKKE,KEKEKLEKSEEEKERNKKKREEADEIMRKLIEEERKKEELKKRMEEMQREKKERRLKQREL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.509
|
0.162
|
0.012
|
0.581
|
0.108
|
0.160
|
0.094
|
0.014
|
0.175
|
0.260
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000441
|
1.000
|
7.000
|
Hsc_gene_1864.t1;Hsc_gene_1864.t2;Hsc_gene_1864.t3;Hsc_gene_1864.t4;Hsc_gene_1864.t5;Hsc_gene_19807.t1;Hsc_gene_19808.t1
|
Hsc_gene_1864.t2;Hsc_gene_1864.t3;Hsc_gene_1864.t4;Hsc_gene_1864.t5
|
— | — |
KAI3420075.1 polynucleotide adenylyltransferase [Globodera pallida]
|
XP_004024152
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:1990817
|
GO:0005575_0.759|GO:0110165_0.756|GO:0005622_0.737|GO:0043226_0.681|GO:0016020_0.672|GO:0043229_0.655|GO:0008150_0.615|GO:0043227_0.586|GO:0003674_0.560|GO:0043231_0.549|GO:0009987_0.519
|
IPR007012+2156-2285+|IPR043519+1949-2124_1959-2098+
|
— |
PF04928+2156-2285+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+1993-2454+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-12;655-805;1520-1677
|
3.000
|
13-654;806-1519;1678-2459
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.624
|
287344.950
|
5.880
|
-20.500
|
34.608
|
10.411
|
53.518
|
46.482
|
17.365
|
17.243
|
36.682
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
696.289
|
22.171
|
150.351
|
167.253
|
75.675
|
11.966
|
27.772
|
8.517
|
3318.878
|
383.216
|
1641.357
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.532
|
2.779
|
— |
-1.177
|
-2.644
|
1.223
|
— |
1.844
|
2.991
|
-4.159
|
— | — | — |
No JSON data available for plots.