Hg_chrom8_TN10mRNA_15190
Organism: Heterodera glycines Gene Locus: chr8:2704447-2705875 Feature type: polypeptideProtein Sequence
Length: 130
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.358 | 0.358 | 0.839 | 0.265 | 2.179 | 0.592 | 0.641 | 1.538 | 0.684 | 0.936 | 1.748 | 1.357 | 1.068 | 1.036 | 2.041 | 0.769 | 0.757 | 1.049 | 0.592 | 1.584 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14340
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.929
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKHKELVPVDKYRIRKKYP
|
— | — | — | — | — | — |
0.000
|
— | — |
0.910
|
0.186
|
0.026
|
0.259
|
0.041
|
0.016
|
0.045
|
0.004
|
0.050
|
0.017
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004704
|
2.000
|
1.000
|
Hsc_gene_1863.t1
|
Hsc_gene_1863.t1
|
— |
O17894.2 Homeobox protein unc-39 [Caenorhabditis elegans]
|
KAI1730875.1 homeobox domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677
|
GO:0008150_0.809|GO:0009987_0.731|GO:0005575_0.713|GO:0110165_0.705|GO:0005622_0.685|GO:0003674_0.670|GO:0005488_0.661|GO:0043226_0.656|GO:0065007_0.654|GO:0043229_0.639|GO:0050789_0.637|GO:0050794_0.628|GO:0016020_0.607|GO:0032502_0.584|GO:0048856_0.584|GO:0032501_0.564|GO:0043227_0.560|GO:0043231_0.549|GO:0007275_0.536|GO:0097159_0.521|GO:0003676_0.514|GO:0008152_0.504|GO:0043170_0.504
|
IPR001356+64-103_66-103+|IPR009057+62-104+|IPR031701+2-54+
|
— |
PF00046+66-103+Homeodomain|PF16878+2-54+Transcriptional_regulator,_SIX1,_N-terminal_SD_domain
|
— |
PTHR10390+2-103+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-130
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.683
|
15521.710
|
9.691
|
7.000
|
42.308
|
13.077
|
56.154
|
43.846
|
24.615
|
17.692
|
37.692
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
96.002
|
33.986
|
78.075
|
16.977
|
13.667
|
16.529
|
20.402
|
18.518
|
57.995
|
302.206
|
197.544
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.969
|
-1.139
|
-2.091
|
— | — | — | — | — | — | — | — | — |
-7.133
|
No JSON data available for plots.