Hg_chrom8_TN10mRNA_15191
Organism: Heterodera glycines Gene Locus: chr8:2704447-2706945 Feature type: polypeptideProtein Sequence
Length: 210
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.609 | 0.443 | 0.779 | 0.657 | 1.746 | 1.099 | 0.567 | 1.905 | 0.741 | 1.158 | 1.227 | 1.12 | 1.587 | 0.824 | 1.652 | 0.952 | 0.859 | 0.938 | 0.733 | 1.261 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14340
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.929
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKHKELVPVDKYRIRKKYP
|
44-64
|
0.998
|
— | — | — | — |
0.000
|
— | — |
0.857
|
0.185
|
0.023
|
0.287
|
0.046
|
0.043
|
0.061
|
0.003
|
0.037
|
0.015
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004704
|
2.000
|
1.000
|
Hsc_gene_1863.t1
|
Hsc_gene_1863.t1
|
— |
O17894.2 Homeobox protein unc-39 [Caenorhabditis elegans]
|
KAI1730875.1 homeobox domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677
|
GO:0008150_0.833|GO:0009987_0.749|GO:0005575_0.704|GO:0110165_0.698|GO:0003674_0.682|GO:0005622_0.672|GO:0065007_0.659|GO:0050789_0.645|GO:0005488_0.641|GO:0043226_0.637|GO:0050794_0.634|GO:0043229_0.616|GO:0016020_0.599|GO:0032502_0.599|GO:0048856_0.597|GO:0032501_0.582|GO:0043227_0.549|GO:0007275_0.547|GO:0043231_0.534|GO:0008152_0.511|GO:0044238_0.508|GO:0097159_0.508|GO:0044237_0.507|GO:0043170_0.506|GO:0048731_0.505
|
IPR001356+144-183+|IPR009057+142-184+|IPR031701+25-134+
|
— |
PF16878+25-134+Transcriptional_regulator,_SIX1,_N-terminal_SD_domain
|
— |
PTHR10390+21-183+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-4
|
1.000
|
5-210
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.632
|
24655.070
|
8.460
|
7.000
|
34.762
|
14.762
|
52.857
|
47.143
|
20.000
|
14.762
|
40.476
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
96.002
|
33.986
|
78.075
|
16.977
|
13.667
|
16.529
|
20.402
|
18.518
|
57.995
|
302.206
|
197.544
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.969
|
-1.139
|
-2.091
|
— | — | — | — | — | — | — | — | — |
-7.133
|
No JSON data available for plots.