Hg_chrom8_TN10mRNA_15195
Organism: Heterodera glycines Gene Locus: chr8:2735193-2739529 Feature type: polypeptideProtein Sequence
Length: 441
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.055 | 1.002 | 0.989 | 0.313 | 0.642 | 0.988 | 1.053 | 0.454 | 1.159 | 1.134 | 0.928 | 1.334 | 1.764 | 1.003 | 1.064 | 1.166 | 0.781 | 0.756 | 1.744 | 1.134 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14344
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_1847;Hsc_gene_1848
|
— | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-24
|
0.943
|
1.000
|
0.000
|
0.000
|
0.159
|
0.201
|
0.067
|
0.336
|
0.069
|
0.096
|
0.078
|
0.066
|
0.316
|
0.938
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011807
|
1.000
|
1.000
|
Hsc_gene_1848.t1
|
Hsc_gene_1848.t1;Hsc_gene_21050.t1
|
— |
Q11174.1 Probable endochitinase [Caenorhabditis elegans]
|
KAH7732349.1 CRE-CHT-1 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005975|GO:0008061
|
GO:0008150_0.864|GO:0005575_0.772|GO:0110165_0.769|GO:0003674_0.758|GO:0050896_0.505|GO:0008152_0.503
|
IPR001223+39-414_43-387+|IPR011583+39-387+|IPR017853+43-412+|IPR029070+287-358_288-358+|IPR050314+39-417+
|
SM00636+39-387+
|
PF00704+43-387+Glycosyl_hydrolases_family_18
|
G3DSA:3.10.50.10:FF:000008+287-358+Chitinase_11|G3DSA:3.20.20.80:FF:000007+42-301+Acidic_mammalian_chitinase
|
PTHR11177+39-417+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
437-441
|
1.000
|
1-436
|
6le8_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.900
|
48934.790
|
9.464
|
11.000
|
21.542
|
13.379
|
42.630
|
57.370
|
12.245
|
9.297
|
51.701
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
royalblue
|
1488.952
|
3.050
|
15.493
|
7.897
|
5.644
|
847.901
|
73.702
|
15794.364
|
214.432
|
72.823
|
133.512
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.118
|
1.233
|
-0.864
|
— |
7.236
|
-3.514
|
4.125
|
-7.605
|
— |
-4.593
|
— | — | — |