Hg_chrom8_TN10mRNA_15196
Organism: Heterodera glycines Gene Locus: chr8:2739716-2745487 Feature type: polypeptideProtein Sequence
Length: 649
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.021 | 1.182 | 0.868 | 0.691 | 0.539 | 1.264 | 0.972 | 0.539 | 0.993 | 1.083 | 0.677 | 1.36 | 1.883 | 1.156 | 0.849 | 1.343 | 0.884 | 0.77 | 1.422 | 1.178 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14345
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_1847;Hsc_gene_1848
|
— | — |
16-Females_and_Males
|
0.987
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-24
|
0.824
|
1.000
|
0.000
|
0.000
|
0.086
|
0.143
|
0.025
|
0.311
|
0.164
|
0.187
|
0.206
|
0.157
|
0.406
|
0.858
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003443
|
2.000
|
1.000
|
Hsc_gene_1847.t1
|
Hsc_gene_1847.t1;Hsc_gene_1848.t1;Hsc_gene_21050.t1
|
— |
Q11174.1 Probable endochitinase [Caenorhabditis elegans]
|
KAH7732349.1 CRE-CHT-1 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004553|GO:0005576|GO:0005975|GO:0008061
|
GO:0008150_0.875|GO:0005575_0.769|GO:0110165_0.763|GO:0003674_0.762|GO:0050896_0.522|GO:0008152_0.503|GO:0003824_0.502
|
IPR001223+39-414_43-387+|IPR001579+157-165+|IPR002557+468-526_471-521+|IPR011583+39-387+|IPR017853+43-412+|IPR029070+287-358_288-358+|IPR036508+481-521_582-611+|IPR050314+39-417+
|
SM00636+39-387+
|
PF00704+43-387+Glycosyl_hydrolases_family_18|PF01607+471-521+Chitin_binding_Peritrophin-A_domain
|
G3DSA:3.10.50.10:FF:000008+287-358+Chitinase_11|G3DSA:3.20.20.80:FF:000007+42-302+Acidic_mammalian_chitinase
|
PTHR11177+39-417+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-649
|
6le8_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.889
|
71469.020
|
8.012
|
7.500
|
17.720
|
13.713
|
42.527
|
57.473
|
9.707
|
8.012
|
54.700
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
720.713
|
59.160
|
69.197
|
79.436
|
64.585
|
127.947
|
563.939
|
2438.756
|
741.872
|
1320.584
|
1072.565
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
0.998
|
2.153
|
4.156
|
-1.972
|
— | — |
-3.841
|
— | — |