Hg_chrom8_TN10mRNA_15204
Organism: Heterodera glycines Gene Locus: chr8:2782465-2784529 Feature type: polypeptideProtein Sequence
Length: 320
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.981 | 0.654 | 0.739 | 0.862 | 0.885 | 0.721 | 0.67 | 1.094 | 0.972 | 0.845 | 1.231 | 0.551 | 0.781 | 1.142 | 2.87 | 1.429 | 1.076 | 0.473 | 1.442 | 0.643 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14353
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.811
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRSR,KKKKGGSSHKKRAQLVGTRRRRASAAEEERATRRRTRRRRAKRRRRRGGATRKRGRSRPRRSER
|
87-107
|
0.979
|
11-51
|
1.000
|
— | — |
0.000
|
— | — |
0.653
|
0.096
|
0.030
|
0.361
|
0.088
|
0.027
|
0.031
|
0.009
|
0.122
|
0.335
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000618
|
4.000
|
3.000
|
Hsc_gene_13877.t1;Hsc_gene_13909.t1;Hsc_gene_870.t1
|
Hsc_gene_13877.t1;Hsc_gene_13909.t1;Hsc_gene_870.t1
|
— |
Q54DF7.1 Probable serine/threonine-protein kinase DDB_G0292354 [Dictyostelium discoideum]
|
KAI6175047.1 Tau-tubulin kinase 1 [Aphelenchoides bicaudatus]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.889|GO:0110165_0.886|GO:0005622_0.799|GO:0043226_0.705|GO:0043229_0.701|GO:0008150_0.682|GO:0016020_0.661|GO:0009987_0.615|GO:0003674_0.595|GO:0005737_0.566|GO:0043227_0.561|GO:0065007_0.543|GO:0050789_0.529|GO:0043231_0.518|GO:0008152_0.502|GO:0043170_0.502
|
IPR011009+101-224+|IPR050235+87-272+
|
— | — | — |
PTHR11909+87-272+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
225-320
|
1.000
|
1-224
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.700
|
36552.720
|
11.472
|
44.500
|
33.750
|
9.062
|
55.938
|
44.062
|
24.375
|
9.375
|
49.062
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
12.451
|
0.915
|
5.076
|
8.210
|
9.891
|
10.526
|
13.785
|
39.393
|
4.146
|
18.439
|
12.314
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.243
|
3.026
|
— | — | — | — |
1.793
|
-1.369
|
— | — | — | — | — |
No JSON data available for plots.