Hg_chrom8_TN10mRNA_15206
Organism: Heterodera glycines Gene Locus: chr8:2809712-2814579 Feature type: polypeptideProtein Sequence
Length: 821
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.161 | 1.303 | 0.974 | 0.21 | 1.482 | 1.718 | 0.783 | 0.853 | 0.568 | 0.938 | 1.532 | 1.433 | 0.744 | 1.054 | 1.243 | 1.027 | 0.659 | 0.812 | 0.75 | 0.215 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14355
|
— | — |
1.778
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.976
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
PGQKRRV,RREEYLNESTELRKMAK,RKMAKNLMGDAAQKQKKQ,KKGDVAEATEDDEEKAERK,KNQKQKQQKQPSKAGQKNAPKADQKKVAPKNQQNGKPKSDQNGGPSPMSKKEKKKQQKREKKEKIKQKHQ
|
— | — |
2-34
|
0.991
|
— | — |
0.000
|
— | — |
0.845
|
0.053
|
0.017
|
0.465
|
0.077
|
0.025
|
0.061
|
0.003
|
0.051
|
0.037
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004707
|
2.000
|
1.000
|
Hsc_gene_424.t1
|
— | — | — |
KAI3413439.1 hypothetical protein GPALN_010932 [Globodera pallida]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677|GO:0005730|GO:0006355|GO:0008134
|
— |
IPR007015+426-686_477-675+|IPR016024+415-589+
|
— |
PF04931+477-675+DNA_polymerase_phi
|
— |
PTHR13213+426-686+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-353;555-641;801-821
|
2.000
|
354-554;642-800
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.865
|
90959.170
|
9.830
|
23.000
|
32.156
|
6.090
|
55.664
|
44.336
|
17.905
|
14.251
|
50.183
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
darkgreen
|
5523.280
|
3867.577
|
3892.642
|
5130.353
|
5103.643
|
3580.075
|
3008.743
|
1101.532
|
15119.061
|
3193.344
|
8304.365
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.220
|
0.270
|
0.507
|
— |
-0.496
|
-0.240
|
-1.807
|
1.593
|
2.135
|
-1.402
|
— | — | — |
No JSON data available for plots.