Hg_chrom8_TN10mRNA_15211
Organism: Heterodera glycines Gene Locus: chr8:2948597-2957543 Feature type: polypeptideProtein Sequence
Length: 1,001
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.418 | 1.626 | 0.854 | 0.62 | 1.116 | 0.768 | 0.69 | 1.399 | 1.687 | 1.242 | 1.317 | 1.234 | 1.665 | 0.807 | 0.958 | 0.856 | 0.901 | 0.681 | 1.614 | 1.205 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14360
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.983
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.001
|
— | — |
0.256
|
0.195
|
0.043
|
0.450
|
0.193
|
0.378
|
0.215
|
0.056
|
0.276
|
0.441
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004708
|
1.000
|
2.000
|
Hsc_gene_3449.t1;Hsc_gene_3449.t2
|
— | — | — |
KAI3416499.1 hypothetical protein GPALN_006039 [Globodera pallida]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0030246
|
— |
IPR001079+453-610_454-617+|IPR013320+451-611+|IPR044156+415-611+
|
— |
PF00337+453-610+Galactoside-binding_lectin
|
— |
PTHR11346+415-611+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
993-1001
|
1.000
|
1-992
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.825
|
116487.810
|
9.059
|
34.000
|
27.572
|
14.985
|
49.051
|
50.949
|
16.184
|
11.389
|
43.057
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
turquoise
|
227.887
|
12.393
|
69.260
|
45.579
|
204.584
|
245.763
|
58.801
|
190.345
|
53.839
|
646.605
|
392.562
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.251
|
1.742
|
-0.495
|
2.137
|
— |
-2.056
|
-0.477
|
-1.553
|
-3.706
|
— | — | — | — |
No JSON data available for plots.