Hg_chrom8_TN10mRNA_15214
Organism: Heterodera glycines Gene Locus: chr8:2967199-2968757 Feature type: polypeptideProtein Sequence
Length: 300
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.163 | 0.853 | 0.606 | 0.92 | 1.111 | 1.026 | 2.659 | 0.333 | 0.889 | 0.631 | 0.859 | 1.176 | 0.278 | 2.372 | 0.952 | 0.476 | 0.601 | 0.404 | 0.769 | 0.49 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14363
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
RKGK
|
— | — | — | — | — | — |
0.153
|
— | — |
0.061
|
0.072
|
0.004
|
0.160
|
0.575
|
0.312
|
0.484
|
0.002
|
0.622
|
0.337
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004709
|
2.000
|
1.000
|
Hsc_gene_3445.t1
|
Hsc_gene_3445.t1
|
— |
Q23628.1 Cuticle collagen lon-3 [Caenorhabditis elegans]
|
KAI1721742.1 cuticle collagen lon-3 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
GO:0008150_0.914|GO:0032501_0.790|GO:0005575_0.785|GO:0032502_0.785|GO:0048856_0.785|GO:0110165_0.778|GO:0030312_0.696|GO:0071944_0.696|GO:0003674_0.651|GO:0031012_0.536|GO:0062023_0.525
|
IPR002486+7-57_9-57+|IPR050632+12-292+
|
SM01088+7-57+
|
PF01484+9-57+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+12-292+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
90-300
|
1.000
|
1-89
|
3hr2_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.973
|
29878.410
|
7.478
|
2.000
|
21.000
|
4.333
|
35.667
|
64.333
|
11.000
|
10.000
|
64.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
1754.021
|
648.998
|
54.042
|
23.579
|
265.829
|
13047.281
|
27.406
|
4870.909
|
1.382
|
571.038
|
326.900
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.819
|
-4.920
|
-1.086
|
3.461
|
5.634
|
-8.879
|
-1.542
|
-7.318
|
-8.921
|
4.421
|
— | — | — |
No JSON data available for plots.