Hg_chrom8_TN10mRNA_15218
Organism: Heterodera glycines Gene Locus: chr8:3003148-3005658 Feature type: polypeptideProtein Sequence
Length: 323
(Signal peptide: 1-27)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.864 | 1.296 | 1.07 | 0.747 | 1.238 | 1.032 | 0.59 | 2.012 | 1.307 | 1.255 | 0.751 | 1.093 | 1.978 | 0.714 | 0.948 | 0.84 | 0.609 | 0.938 | 2.143 | 0.728 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14367
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-27
|
0.960
|
1.000
|
0.000
|
0.000
|
0.228
|
0.427
|
0.047
|
0.231
|
0.533
|
0.257
|
0.511
|
0.010
|
0.381
|
0.725
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003120
|
2.000
|
1.000
|
Hsc_gene_9436.t1
|
Hsc_gene_3444.t1
|
— | — |
KAI3419416.1 Beta-1,3-galactosyltransferase 2 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006486|GO:0016020|GO:0016758
|
GO:0008150_0.946|GO:0008152_0.766|GO:0009987_0.758|GO:0003674_0.756|GO:0009058_0.722|GO:0044238_0.701|GO:0003824_0.688|GO:0044237_0.618|GO:0016740_0.586|GO:0044249_0.582|GO:0005575_0.560|GO:0110165_0.554|GO:0016757_0.546|GO:0016758_0.544|GO:1901135_0.534|GO:1901137_0.509
|
IPR002659+47-290_73-267+
|
— |
PF01762+73-267+Galactosyltransferase
|
— |
PTHR11214+47-290+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-323
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.643
|
37254.320
|
5.715
|
-5.500
|
26.935
|
16.409
|
46.130
|
53.870
|
13.622
|
13.313
|
45.511
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
303.910
|
1300.523
|
49.223
|
50.726
|
94.306
|
102.338
|
82.799
|
272.250
|
4.112
|
594.462
|
341.455
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-4.953
|
-4.819
|
— |
0.865
|
— | — |
1.308
|
-1.574
|
— | — | — | — | — |