Hg_chrom8_TN10mRNA_15221
Organism: Heterodera glycines Gene Locus: chr8:3023716-3029153 Feature type: polypeptideProtein Sequence
Length: 415
(Signal peptide: 1-16)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.757 | 1.233 | 1.446 | 0.748 | 0.482 | 1.174 | 0.688 | 1.084 | 1.392 | 0.977 | 0.657 | 2.693 | 1.339 | 0.88 | 1.033 | 0.861 | 0.79 | 0.949 | 2.41 | 1.63 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14370
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.734
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-16
|
0.996
|
1.000
|
0.000
|
0.000
|
0.117
|
0.248
|
0.035
|
0.280
|
0.267
|
0.362
|
0.188
|
0.038
|
0.447
|
0.853
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011811
|
1.000
|
1.000
|
Hsc_gene_3443.t1
|
Hsc_gene_3443.t1
|
— |
Q90744.1 Alpha-N-acetylgalactosaminidase [Gallus gallus]
|
AVA09680.1 putative effector protein [Heterodera avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004553|GO:0005975
|
GO:0008150_0.863|GO:0003674_0.742|GO:0008152_0.693|GO:0003824_0.676|GO:0044238_0.661|GO:0005575_0.648|GO:0110165_0.646|GO:0016787_0.568|GO:0009056_0.536|GO:0016798_0.518|GO:0004553_0.517|GO:0016020_0.505
|
IPR000111+70-86+|IPR002241+13-406_19-38_24-308_25-308_65-80_106-127_140-157_167-185_243-262_264-285+|IPR013780+314-407+|IPR013785+17-310+|IPR017853+17-309+|IPR041233+341-404+
|
— |
PF16499+24-308+Alpha_galactosidase_A|PF17801+341-404+Alpha_galactosidase_C-terminal_beta_sandwich_domain
|
G3DSA:3.20.20.70:FF:000197+17-310+Alpha-galactosidase
|
PTHR11452+13-406+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-415
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.578
|
47916.710
|
6.229
|
-1.500
|
22.410
|
15.663
|
43.133
|
56.867
|
11.566
|
10.843
|
49.398
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
739.438
|
116.054
|
591.558
|
1063.417
|
1077.783
|
1795.253
|
1753.655
|
796.594
|
8.293
|
530.954
|
306.957
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.121
|
3.059
|
0.954
|
— |
0.750
|
— |
-1.278
|
1.282
|
— |
7.239
|
3.606
|
— | — |