SCN Proteipedia

Hg_chrom8_TN10mRNA_15227

Organism: Heterodera glycines Gene Locus: chr8:3048785-3076362 Feature type: polypeptide

Protein Sequence

Length: 2,700

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.745	1.413	1.003	0.294	1.309	1.519	0.622	0.963	1.136	1.026	1.493	2.004	1.091	0.819	0.967	1.021	0.783	0.657	0.798	1.187	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14375	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	17-ppJ2_pJ2	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide	extracellular	—	KKHK,KRKL,RKKRK,RRGKRRV,KKETKTVQMKKMVKKLTK,KKPMQNEVSSEKIAKPKKS,KKSSTKPPSAAGVKKKPNK,KKPDYDKMNTINSRKRDAK,KKKLAPSDNYTFEELLKKK,KKLAPSDNYTFEELLKKKQ,REREEKQRKKEAARRRQKE	—	—	—	—	—	—	0.000	—	—	0.224	0.168	0.041	0.273	0.298	0.198	0.216	0.064	0.406	0.430

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004710	1.000	2.000	Hsc_gene_2934.t1;Hsc_gene_3439.t1	Hsc_gene_2934.t1;Hsc_gene_3439.t1	—	P97429.4 Annexin A4 [Mus musculus]	XP_039274449.1 annexin A13-like [Styela clava]	No	-0.230

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005509\|GO:0005544	GO:0005575_0.948\|GO:0110165_0.945\|GO:0016020_0.894\|GO:0043226_0.820\|GO:0005622_0.787\|GO:0008150_0.758\|GO:0071944_0.753\|GO:0043227_0.729\|GO:0043229_0.717\|GO:0005886_0.699\|GO:0009987_0.669\|GO:0003674_0.631\|GO:0005737_0.631\|GO:0043231_0.620\|GO:0005488_0.603\|GO:0051179_0.591\|GO:0006810_0.578\|GO:0051234_0.578\|GO:0065007_0.537\|GO:0050789_0.522	IPR018502+1009-1083_1015-1080_1027-1081_1103-1168_1113-1168_1214-1294_1218-1291_1231-1292_1471-1544_1476-1529_1488-1542+\|IPR037104+1010-1173_1011-1087_1088-1173_1214-1373_1216-1301_1440-1644_1472-1543_1544-1644+	SM00335+1027-1081_1113-1168_1231-1292_1488-1542+	PF00191+1015-1080_1103-1168_1218-1291_1476-1529+Annexin	—	PTHR10502+1003-1175+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-400;479-814;2383-2468	3.000	401-478;815-2382;2469-2700	1anx_C	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.780	309783.280	9.066	59.000	29.889	10.926	53.815	46.185	16.519	13.370	44.593

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	green	18268.643	56.066	4483.674	2389.069	601.028	105.293	178.969	137.781	91936.557	7990.940	43967.633

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	6.094	5.277	-0.801	-2.022	-2.498	0.775	—	—	3.422	-5.099	-3.536	—	—

No JSON data available for plots.

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