Hg_chrom8_TN10mRNA_15230
Organism: Heterodera glycines Gene Locus: chr8:3301943-3304165 Feature type: polypeptideProtein Sequence
Length: 328
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.993 | 1.276 | 0.665 | 0.841 | 0.661 | 1.173 | 2.65 | 0.305 | 1.016 | 0.494 | 0.693 | 1.076 | 0.339 | 2.111 | 1.058 | 0.828 | 0.8 | 0.554 | 0.704 | 0.359 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14378
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.136
|
— | — |
0.052
|
0.069
|
0.004
|
0.160
|
0.542
|
0.271
|
0.441
|
0.003
|
0.665
|
0.289
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004709
|
2.000
|
1.000
|
Hsc_gene_3445.t1
|
— | — |
Q23628.1 Cuticle collagen lon-3 [Caenorhabditis elegans]
|
KAI1721742.1 cuticle collagen lon-3 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
GO:0008150_0.933|GO:0032502_0.820|GO:0048856_0.820|GO:0032501_0.811|GO:0005575_0.702|GO:0110165_0.696|GO:0030312_0.603|GO:0071944_0.603|GO:0003674_0.570|GO:0007275_0.552
|
IPR002486+7-57_9-57+|IPR008160+146-204+|IPR050632+12-283+
|
SM01088+7-57+
|
PF01391+146-204+Collagen_triple_helix_repeat_(20_copies)|PF01484+9-57+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+12-283+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
104-328
|
1.000
|
1-103
|
9han_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.904
|
32486.060
|
8.878
|
8.000
|
17.988
|
3.963
|
38.720
|
61.280
|
10.366
|
7.622
|
67.683
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
1352.245
|
772.077
|
10.944
|
12.630
|
379.756
|
11155.028
|
69.522
|
3163.398
|
5.529
|
75.665
|
45.606
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-6.377
|
-6.073
|
— |
4.879
|
4.892
|
-7.320
|
-1.937
|
-5.363
|
— | — | — | — | — |
No JSON data available for plots.