Hg_chrom8_TN10mRNA_15238
Organism: Heterodera glycines Gene Locus: chr8:3339660-3346036 Feature type: polypeptideProtein Sequence
Length: 385
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.936 | 0.966 | 1.181 | 0.179 | 1.126 | 1.199 | 0.464 | 0.779 | 0.75 | 1.58 | 1.299 | 1.222 | 1.154 | 0.649 | 0.954 | 0.853 | 0.937 | 1.377 | 0.999 | 1.146 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14385
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.363
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.350
|
0.182
|
0.062
|
0.575
|
0.248
|
0.681
|
0.425
|
0.015
|
0.154
|
0.185
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
Q9XXU9.1 V-type proton ATPase subunit C [Caenorhabditis elegans]
|
KAI3422616.1 V-type proton ATPase subunit C [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0015078|GO:0033180|GO:0046961|GO:1902600
|
GO:0005575_0.853|GO:0110165_0.851|GO:0008150_0.743|GO:0005622_0.716|GO:0016020_0.682|GO:0043226_0.636|GO:0043229_0.631|GO:0005737_0.599|GO:0009987_0.599|GO:0043227_0.518
|
IPR004907+7-381_8-372_9-375+|IPR036132+5-378+
|
— |
PF03223+8-372+V-ATPase_subunit_C
|
G3DSA:3.30.70.100:FF:000002+164-253+V-type_proton_ATPase_subunit_C
|
PTHR10137+7-381+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-385
|
9brd_G
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.517
|
43819.300
|
7.425
|
3.000
|
28.052
|
10.909
|
48.571
|
51.429
|
14.805
|
13.247
|
47.273
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1740.074
|
1788.022
|
2005.885
|
1483.189
|
1895.579
|
1792.377
|
1682.371
|
1890.534
|
672.464
|
2406.742
|
1663.480
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.407
|
-0.327
|
0.322
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.