Hg_chrom8_TN10mRNA_15239
Organism: Heterodera glycines Gene Locus: chr8:3348914-3349934 Feature type: polypeptideProtein Sequence
Length: 292
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.234 | 1.035 | 0.996 | 0.0 | 1.084 | 1.142 | 0.734 | 1.884 | 1.065 | 1.157 | 0.363 | 1.007 | 1.332 | 0.922 | 1.538 | 1.125 | 0.618 | 1.142 | 1.054 | 1.007 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14386
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — |
27-49
|
0.997
|
— | — | — | — |
0.000
|
— | — |
0.768
|
0.106
|
0.022
|
0.375
|
0.076
|
0.120
|
0.077
|
0.033
|
0.032
|
0.165
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011813
|
1.000
|
1.000
|
Hsc_gene_19441.t1
|
Hsc_gene_13263.t1;Hsc_gene_13263.t2;Hsc_gene_13263.t3;Hsc_gene_16300.t1;Hsc_gene_16300.t2;Hsc_gene_16300.t3;Hsc_gene_17234.t1;Hsc_gene_17324.t1;Hsc_gene_17423.t1;Hsc_gene_17423.t2;Hsc_gene_17423.t3;Hsc_gene_18050.t1;Hsc_gene_18051.t1;Hsc_gene_19039.t1;Hsc_gene_19441.t1;Hsc_gene_26262.t1;Hsc_gene_2997.t1;Hsc_gene_3087.t1;Hsc_gene_5177.t1;Hsc_gene_7462.t1;Hsc_gene_7894.t1;Hsc_gene_7894.t2;Hsc_gene_8741.t1;Hsc_gene_8741.t2;Hsc_gene_9381.t1
|
— | — |
KAI1715010.1 malate dehydrogenase, cytoplasmic [Ditylenchus destructor]
|
No
|
0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
283-292
|
1.000
|
1-282
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.595
|
32695.720
|
6.430
|
-0.500
|
25.685
|
13.356
|
46.233
|
53.767
|
13.699
|
11.986
|
50.685
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
26.724
|
0.154
|
1.937
|
1.704
|
1.297
|
5.446
|
1.418
|
2.783
|
1.896
|
109.967
|
63.651
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.426
|
3.341
|
— | — |
2.071
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.