Hg_chrom8_TN10mRNA_15241
Organism: Heterodera glycines Gene Locus: chr8:3362025-3364208 Feature type: polypeptideProtein Sequence
Length: 425
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.176 | 1.313 | 1.155 | 0.406 | 1.098 | 1.267 | 0.868 | 1.412 | 1.15 | 1.431 | 0.392 | 1.938 | 1.438 | 0.769 | 1.2 | 0.739 | 0.694 | 1.07 | 0.543 | 0.346 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14388
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KRAR
|
— | — |
63-83
|
0.999
|
— | — |
0.000
|
— | — |
0.488
|
0.201
|
0.051
|
0.544
|
0.192
|
0.169
|
0.234
|
0.006
|
0.181
|
0.524
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010956
|
2.000
|
0.000
|
0.000
|
— | — | — |
KAI3419128.1 hypothetical protein GPALN_006889 [Globodera pallida]
|
No
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.942|GO:0009987_0.875|GO:0005575_0.873|GO:0003674_0.871|GO:0110165_0.867|GO:0016020_0.783|GO:0005488_0.779|GO:0008152_0.776|GO:0005515_0.744|GO:0005622_0.740|GO:0043170_0.723|GO:0043226_0.692|GO:0043229_0.675|GO:0043227_0.653|GO:0043231_0.646|GO:0005634_0.576|GO:0065007_0.555|GO:0050789_0.544|GO:0050896_0.543|GO:0005737_0.541|GO:0050794_0.524|GO:0032501_0.522|GO:0044238_0.520
|
IPR002110+141-170_181-210_181-245_214-243_214-246_247-276_247-278_247-279_289-375_315-344_315-347_348-377+|IPR036770+89-425_105-402+
|
SM00248+141-170_181-210_214-243_247-276_315-344_348-377+
|
PF00023+247-278+Ankyrin_repeat|PF12796+181-245_289-375+Ankyrin_repeats_(3_copies)
|
— |
PTHR24178+145-278+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
371-425
|
1.000
|
1-370
|
1n0r_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.623
|
46862.220
|
4.832
|
-13.000
|
24.235
|
9.882
|
44.235
|
55.765
|
11.294
|
12.941
|
51.059
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
337.475
|
24.249
|
34.394
|
49.952
|
104.693
|
641.812
|
128.554
|
947.590
|
0.000
|
752.238
|
429.850
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.907
|
0.647
|
1.037
|
2.629
|
-2.306
|
— |
-2.732
|
-10.350
|
6.499
|
— | — | — |
No JSON data available for plots.