Hg_chrom8_TN10mRNA_15248
Organism: Heterodera glycines Gene Locus: chr8:3447771-3449046 Feature type: polypeptideProtein Sequence
Length: 281
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.828 | 1.159 | 0.841 | 0.982 | 1.068 | 1.095 | 0.805 | 0.89 | 1.503 | 1.298 | 1.348 | 1.675 | 2.076 | 0.479 | 0.654 | 1.118 | 0.642 | 0.863 | 1.369 | 0.209 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14395
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.887
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.310
|
0.175
|
0.037
|
0.180
|
0.792
|
0.367
|
0.337
|
0.263
|
0.291
|
0.071
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004714
|
2.000
|
1.000
|
Hsc_gene_3197.t1
|
— | — | — |
KAI3419130.1 Ubiquitin carboxyl-terminal hydrolase 7 [Globodera pallida]
|
MDP9132121
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.941|GO:0009987_0.877|GO:0003674_0.841|GO:0065007_0.803|GO:0050789_0.790|GO:0005575_0.737|GO:0110165_0.737|GO:0003824_0.713|GO:0065008_0.708|GO:0016020_0.679|GO:0016787_0.678|GO:0031647_0.674|GO:0140096_0.668|GO:0008233_0.662|GO:0004843_0.650|GO:0008234_0.650|GO:0019783_0.650|GO:0101005_0.650|GO:0005622_0.634|GO:0005737_0.612|GO:0043226_0.604|GO:0043229_0.584|GO:0043227_0.576|GO:0043231_0.550|GO:0050794_0.539|GO:0005488_0.532|GO:0008152_0.519|GO:0044238_0.515|GO:0005515_0.514|GO:0044237_0.514|GO:0071840_0.510|GO:0009058_0.506|GO:0016043_0.505
|
IPR002083+147-279_149-279+|IPR008974+135-281+
|
— |
PF22486+149-279+MATH_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-24
|
1.000
|
25-281
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.754
|
31496.500
|
8.095
|
5.500
|
24.911
|
11.744
|
45.907
|
54.093
|
13.879
|
11.032
|
46.263
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
red
|
170.889
|
25.789
|
58.425
|
35.571
|
100.110
|
158.865
|
146.130
|
164.835
|
0.000
|
488.991
|
279.424
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.944
|
— |
-0.602
|
1.461
|
0.681
|
— | — | — | — |
6.010
|
— | — | — |
No JSON data available for plots.