SCN Proteipedia

Hg_chrom8_TN10mRNA_15265

Organism: Heterodera glycines Gene Locus: chr8:3721889-3729043 Feature type: polypeptide

Protein Sequence

Length: 1,002

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.986	0.928	1.216	0.723	0.948	1.152	0.463	0.998	1.109	1.443	0.741	1.82	1.164	0.979	1.222	1.297	0.818	1.028	0.691	0.587	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14413	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	11-Not_Clustered	0.832

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm\|lysosome_vacuole	—	KRSLQLSELLKKEKL	—	—	28-69	0.984	—	—	0.000	—	—	0.306	0.266	0.035	0.526	0.233	0.721	0.578	0.086	0.238	0.073

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011819	1.000	1.000	Hsc_gene_3163.t1	Hsc_gene_3163.t1	—	Q6AZN6.1 Phosphatidylinositol 3-kinase catalytic subunit type 3 [Xenopus laevis]	KAH7730079.1 Phosphatidylinositol 3-kinase catalytic subunit type 3 [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0016301\|GO:0016303\|GO:0046854	GO:0008150_0.960\|GO:0009987_0.900\|GO:0005575_0.889\|GO:0110165_0.883\|GO:0003674_0.787\|GO:0008152_0.760\|GO:0005622_0.754\|GO:0044237_0.737\|GO:0044238_0.710\|GO:0016020_0.705\|GO:0009058_0.687\|GO:0044249_0.665\|GO:0005737_0.641\|GO:0003824_0.640\|GO:0065007_0.635\|GO:0050789_0.615\|GO:0006793_0.607\|GO:0006796_0.607\|GO:0016740_0.604\|GO:0071840_0.587\|GO:0016043_0.581\|GO:0016772_0.578\|GO:0050794_0.576\|GO:0006629_0.575\|GO:0019637_0.574\|GO:0008610_0.572\|GO:0016301_0.572\|GO:0044255_0.571\|GO:0046486_0.569\|GO:0090407_0.569\|GO:0006644_0.568\|GO:0006650_0.568\|GO:0006661_0.564\|GO:0008654_0.564\|GO:0045017_0.564\|GO:0046474_0.564\|GO:0046488_0.564\|GO:0050896_0.558\|GO:0016773_0.555\|GO:0043226_0.534\|GO:0046854_0.525\|GO:0051179_0.513\|GO:0036092_0.508\|GO:0043229_0.506	IPR000403+715-986_749-814_750-999_837-946+\|IPR001263+368-632_369-642_371-615+\|IPR002420+13-197_19-128_46-211+\|IPR008290+1-177_187-1002+\|IPR011009+652-993+\|IPR015433+62-984+\|IPR016024+352-613+\|IPR018936+753-767_843-863+\|IPR035892+13-168_45-143+\|IPR036940+807-1001+\|IPR042236+374-644+	SM00142+19-128+\|SM00145+369-642+\|SM00146+750-999+	PF00454+749-814_837-946+Phosphatidylinositol_3-_and_4-kinase\|PF00613+371-615+Phosphoinositide_3-kinase_family,_accessory_domain_(PIK_domain)\|PF00792+46-211+Phosphoinositide_3-kinase_C2	G3DSA:1.10.1070.11:FF:000002+805-1002+Phosphatidylinositol_3-kinase_catalytic_subunit_type_3\|G3DSA:3.30.1010.10:FF:000002+647-803+Phosphatidylinositol_3-kinase_catalytic_subunit_type_3	PTHR10048+62-984+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	155-218;280-372	3.000	1-154;219-279;373-1002	2x6k_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.589	111873.000	6.114	-5.000	25.250	9.082	47.804	52.196	12.874	12.375	51.098

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	lightcyan	1338.661	1236.313	1145.901	1346.570	1675.853	1581.303	2325.019	1327.739	700.274	1341.924	1066.931

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.339	—	0.341	0.284	—	0.567	-0.356	0.951	—	—	—	—	—

No JSON data available for plots.

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