Hg_chrom8_TN10mRNA_15266
Organism: Heterodera glycines Gene Locus: chr8:3733512-3734850 Feature type: polypeptideProtein Sequence
Length: 211
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.378 | 1.323 | 0.689 | 1.798 | 0.948 | 1.58 | 1.016 | 0.948 | 0.527 | 0.448 | 0.862 | 1.673 | 0.658 | 1.003 | 0.967 | 1.016 | 2.253 | 0.359 | 0.0 | 0.418 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14414
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.677
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.609
|
0.192
|
0.027
|
0.663
|
0.169
|
0.097
|
0.094
|
0.010
|
0.058
|
0.056
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011820
|
1.000
|
1.000
|
Hsc_gene_3166.t1
|
— | — |
O76080.1 AN1-type zinc finger protein 5 [Homo sapiens]
|
KAI6181628.1 AN1-type zinc finger protein 5 [Aphelenchoides besseyi];KAI6195313.1 AN1-type zinc finger protein 5 [Aphelenchoides besseyi]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677|GO:0008270
|
GO:0008150_0.870|GO:0050896_0.668|GO:0005575_0.601|GO:0009987_0.597|GO:0110165_0.594
|
IPR000058+146-192_152-189+|IPR002653+6-40_9-33_11-33+|IPR035896+115-206_136-206+|IPR050652+2-211+
|
SM00154+152-189+|SM00259+9-33+
|
PF01428+152-189+AN1-like_Zinc_finger|PF01754+11-33+A20-like_zinc_finger
|
G3DSA:4.10.1110.10:FF:000001+123-207+Zinc_finger_AN1-type_containing_6
|
PTHR10634+2-211+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-211
|
0.000
|
— |
1wfl_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.860
|
22282.660
|
7.724
|
4.000
|
21.801
|
5.687
|
54.502
|
45.498
|
12.322
|
9.479
|
63.507
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
1939.586
|
1292.301
|
1357.963
|
1543.123
|
1517.833
|
3671.193
|
2104.791
|
6415.400
|
1249.937
|
834.760
|
1012.693
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.157
|
0.118
|
0.292
|
— |
1.289
|
-0.792
|
0.698
|
-1.464
|
— | — | — | — | — |
No JSON data available for plots.