Hg_chrom8_TN10mRNA_15267
Organism: Heterodera glycines Gene Locus: chr8:3735384-3736237 Feature type: polypeptideProtein Sequence
Length: 102
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.684 | 0.456 | 1.248 | 1.352 | 0.817 | 2.262 | 0.934 | 0.0 | 0.654 | 1.192 | 0.891 | 2.307 | 1.362 | 0.754 | 1.0 | 2.241 | 0.643 | 0.594 | 0.754 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14415
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-Not_Clustered
|
0.774
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.244
|
0.815
|
0.081
|
0.332
|
0.086
|
0.254
|
0.553
|
0.043
|
0.035
|
0.475
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011821
|
1.000
|
1.000
|
Hsc_gene_3167.t1
|
Hsc_gene_3167.t1
|
— |
O45319.1 Mitochondrial import inner membrane translocase subunit tim-13 [Caenorhabditis elegans]
|
KAI6220221.1 Mitochondrial import inner membrane translocase subunit [Aphelenchoides besseyi]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.941|GO:0110165_0.935|GO:0005622_0.769|GO:0016020_0.704|GO:0005737_0.681|GO:0043226_0.667|GO:0043229_0.650|GO:0043227_0.620|GO:0043231_0.604
|
IPR004217+23-80+|IPR035427+5-90_28-86+
|
— |
PF02953+23-80+Tim10/DDP_family_zinc_finger
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-25;88-102
|
1.000
|
26-87
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.842
|
11083.470
|
5.048
|
-1.000
|
22.549
|
5.882
|
52.941
|
47.059
|
10.784
|
11.765
|
53.922
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
1118.808
|
420.371
|
816.703
|
1465.504
|
1447.461
|
899.938
|
824.392
|
633.415
|
704.166
|
1926.240
|
1402.494
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.729
|
1.665
|
0.952
|
— |
-0.670
|
— |
-0.612
|
0.523
|
-1.571
|
— | — | — | — |
No JSON data available for plots.