Hg_chrom8_TN10mRNA_15269
Organism: Heterodera glycines Gene Locus: chr8:3740688-3743695 Feature type: polypeptideProtein Sequence
Length: 539
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.122 | 1.294 | 0.877 | 0.32 | 0.742 | 1.617 | 1.215 | 1.577 | 1.567 | 0.376 | 0.618 | 0.982 | 0.618 | 0.928 | 0.909 | 1.325 | 1.247 | 1.293 | 0.571 | 0.491 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14417
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.865
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.710
|
0.182
|
0.001
|
0.542
|
0.066
|
0.068
|
0.078
|
0.005
|
0.042
|
0.050
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011822
|
1.000
|
1.000
|
Hsc_gene_3169.t1
|
Hsc_gene_3169.t1
|
— | — |
KAI1729125.1 KH domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0008150_0.837|GO:0009987_0.761|GO:0003674_0.727|GO:0005575_0.711|GO:0110165_0.663|GO:0005488_0.651|GO:0097159_0.593|GO:0065007_0.582|GO:0050789_0.577|GO:0003676_0.570|GO:0005622_0.565|GO:0003723_0.549|GO:0008152_0.539|GO:0044238_0.518|GO:0043226_0.515|GO:0044237_0.512|GO:0032501_0.508|GO:0043229_0.508|GO:0009058_0.506|GO:0050794_0.502
|
IPR004087+30-111_234-430_440-515+|IPR004088+34-108_239-274_447-508+|IPR036612+30-116_236-300_237-342_445-521+
|
SM00322+30-111_234-430_440-515+
|
PF00013+34-108_239-274_447-508+KH_domain
|
— |
PTHR10288+25-273+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-20;104-147;265-408;519-539
|
3.000
|
21-103;148-264;409-518
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.862
|
56880.110
|
6.967
|
4.500
|
20.965
|
7.792
|
49.722
|
50.278
|
11.688
|
9.276
|
61.410
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
darkgrey
|
2157.098
|
2286.791
|
1052.550
|
1507.389
|
2393.396
|
3130.901
|
1570.474
|
2332.582
|
724.884
|
3540.859
|
2334.012
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.349
|
-0.738
|
0.627
|
0.635
|
0.402
|
-0.985
|
-0.534
|
-0.425
|
-2.396
|
— | — | — | — |
No JSON data available for plots.