Hg_chrom8_TN10mRNA_15281
Organism: Heterodera glycines Gene Locus: chr8:3777047-3779125 Feature type: polypeptideProtein Sequence
Length: 416
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.755 | 1.006 | 0.699 | 0.58 | 1.162 | 1.109 | 0.658 | 1.202 | 0.908 | 1.104 | 0.874 | 0.566 | 1.068 | 1.202 | 1.374 | 1.477 | 1.34 | 0.983 | 1.849 | 0.354 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14429
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion|lysosome_vacuole
|
— | — | — | — |
23-76
|
0.951
|
— | — |
0.000
|
— | — |
0.179
|
0.628
|
0.227
|
0.282
|
0.309
|
0.612
|
0.548
|
0.092
|
0.250
|
0.247
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000177
|
10.000
|
2.000
|
Hsc_gene_3110.t1;Hsc_gene_3110.t2
|
— | — | — |
KAI6171307.1 Vacuolar protein sorting-associated protein 13C [Aphelenchoides bicaudatus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.937|GO:0005575_0.922|GO:0110165_0.922|GO:0016020_0.846|GO:0005622_0.836|GO:0043226_0.800|GO:0043229_0.778|GO:0005737_0.758|GO:0043227_0.755|GO:0071944_0.748|GO:0043231_0.733|GO:0005886_0.726|GO:0005773_0.616|GO:0012505_0.607|GO:0008152_0.600|GO:0031090_0.581|GO:0031982_0.580|GO:0031410_0.561|GO:0097708_0.561|GO:0098588_0.560|GO:0009987_0.535
|
IPR026847+33-335+
|
— | — | — |
PTHR16166+33-335+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-14;221-266
|
2.000
|
15-220;267-416
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.886
|
46450.420
|
8.998
|
12.000
|
25.721
|
9.856
|
52.885
|
47.115
|
14.904
|
10.817
|
53.125
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
473.407
|
647.654
|
441.828
|
369.825
|
425.233
|
373.795
|
541.162
|
653.346
|
210.346
|
618.582
|
443.623
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.781
|
-0.945
|
-0.147
|
0.169
|
— |
0.544
|
0.701
|
— | — | — | — | — | — |
No JSON data available for plots.