Hg_chrom8_TN10mRNA_15287
Organism: Heterodera glycines Gene Locus: chr8:3796555-3799893 Feature type: polypeptideProtein Sequence
Length: 635
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.678 | 1.318 | 0.744 | 0.869 | 1.26 | 0.727 | 0.769 | 1.339 | 1.19 | 1.064 | 0.74 | 1.019 | 0.831 | 1.333 | 1.253 | 1.102 | 1.213 | 1.026 | 1.333 | 0.834 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14434
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.968
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
lysosome_vacuole
|
— |
KRIYIEIVVVDEPIRRGNR
|
— | — |
23-73
|
0.937
|
— | — |
0.000
|
— | — |
0.190
|
0.465
|
0.202
|
0.308
|
0.271
|
0.703
|
0.545
|
0.110
|
0.373
|
0.238
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000177
|
10.000
|
2.000
|
Hsc_gene_3110.t1;Hsc_gene_3110.t2
|
— | — | — |
KAI6171307.1 Vacuolar protein sorting-associated protein 13C [Aphelenchoides bicaudatus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.954|GO:0005575_0.895|GO:0110165_0.892|GO:0005622_0.797|GO:0016020_0.796|GO:0043226_0.748|GO:0005737_0.738|GO:0071944_0.733|GO:0043229_0.721|GO:0005886_0.709|GO:0043227_0.705|GO:0043231_0.684|GO:0008152_0.607|GO:0005773_0.603|GO:0012505_0.591|GO:0031982_0.579|GO:0031090_0.572|GO:0031410_0.561|GO:0097708_0.561|GO:0098588_0.559|GO:0009987_0.535
|
IPR009543+395-595+|IPR026847+33-332+
|
— |
PF06650+395-595+Vacuolar-sorting_associated_protein_13,_adaptor_binding_domain
|
— |
PTHR16166+33-332+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-14;221-265;623-635
|
2.000
|
15-220;266-622
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.794
|
70922.310
|
6.936
|
4.500
|
25.354
|
10.236
|
48.976
|
51.024
|
13.701
|
11.654
|
53.386
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
174.743
|
350.558
|
249.408
|
146.089
|
130.094
|
148.435
|
208.850
|
250.302
|
191.097
|
64.777
|
118.914
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.721
|
-1.400
|
-0.663
|
— | — |
0.502
|
0.646
|
— | — | — | — | — | — |
No JSON data available for plots.