Hg_chrom8_TN10mRNA_15289
Organism: Heterodera glycines Gene Locus: chr8:3805453-3808235 Feature type: polypeptideProtein Sequence
Length: 541
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.817 | 0.989 | 0.706 | 0.51 | 1.171 | 1.137 | 0.462 | 1.201 | 1.109 | 1.099 | 0.784 | 1.087 | 1.13 | 1.137 | 1.584 | 1.347 | 1.333 | 1.008 | 1.706 | 0.381 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14436
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.846
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— | — |
21-42
|
0.993
|
— | — | — | — |
0.000
|
— | — |
0.141
|
0.565
|
0.152
|
0.297
|
0.311
|
0.521
|
0.481
|
0.098
|
0.282
|
0.155
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000177
|
10.000
|
2.000
|
Hsc_gene_3110.t1;Hsc_gene_3110.t2
|
— | — | — |
KAI6171307.1 Vacuolar protein sorting-associated protein 13C [Aphelenchoides bicaudatus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.939|GO:0005575_0.912|GO:0110165_0.909|GO:0005622_0.827|GO:0016020_0.826|GO:0043226_0.790|GO:0043229_0.764|GO:0043227_0.749|GO:0005737_0.744|GO:0071944_0.732|GO:0043231_0.718|GO:0005886_0.710|GO:0008152_0.607|GO:0005773_0.602|GO:0012505_0.596|GO:0031090_0.575|GO:0031982_0.573|GO:0031410_0.557|GO:0097708_0.557|GO:0098588_0.556|GO:0009987_0.535
|
IPR026847+44-335+
|
— | — | — |
PTHR16166+44-335+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;500-541
|
1.000
|
2-499
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.839
|
61223.610
|
9.495
|
17.500
|
26.248
|
9.982
|
52.495
|
47.505
|
15.342
|
10.906
|
50.647
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
193.168
|
268.231
|
161.597
|
124.061
|
117.976
|
107.436
|
129.439
|
183.615
|
114.625
|
349.510
|
248.845
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.962
|
-1.249
|
-0.271
|
— | — | — |
0.664
|
— | — | — | — | — | — |
No JSON data available for plots.