Hg_chrom8_TN10mRNA_15290
Organism: Heterodera glycines Gene Locus: chr8:3811914-3814006 Feature type: polypeptideProtein Sequence
Length: 304
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.88 | 0.841 | 1.136 | 1.134 | 0.877 | 0.843 | 1.214 | 0.658 | 1.096 | 1.111 | 0.897 | 1.935 | 0.914 | 0.886 | 1.544 | 0.893 | 0.701 | 1.196 | 1.518 | 0.29 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14437
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RRSRGNRKSHWSLKRSKC,RKSHWSLKRSKCNRQKREK
|
5-25
|
0.980
|
— | — | — | — |
0.000
|
— | — |
0.222
|
0.196
|
0.016
|
0.545
|
0.110
|
0.053
|
0.065
|
0.033
|
0.035
|
0.550
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
Q17335.1 Alcohol dehydrogenase class-3 [Caenorhabditis elegans]
|
KAI6199635.1 S-(hydroxymethyl)glutathione dehydrogenase [Aphelenchoides besseyi]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008270|GO:0016491
|
GO:0008150_0.805|GO:0003674_0.766|GO:0005575_0.676|GO:0110165_0.667|GO:0003824_0.658|GO:0008152_0.617|GO:0016491_0.558|GO:0016020_0.537|GO:0005622_0.517|GO:0009987_0.512|GO:0016614_0.502|GO:0016616_0.502
|
IPR002328+54-68+|IPR011032+42-106_251-299+|IPR013149+148-221+|IPR013154+39-102+|IPR036291+132-265+
|
— |
PF00107+148-221+Zinc-binding_dehydrogenase|PF08240+39-102+Alcohol_dehydrogenase_GroES-like_domain
|
G3DSA:3.40.50.720:FF:000003+127-236+S-(hydroxymethyl)glutathione_dehydrogenase
|
PTHR43880+42-104+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-304
|
6sdm_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.862
|
33314.360
|
8.495
|
8.000
|
26.316
|
7.566
|
43.750
|
56.250
|
14.803
|
11.513
|
53.947
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
832.373
|
3193.255
|
728.247
|
268.426
|
134.421
|
388.577
|
383.624
|
1050.218
|
728.167
|
790.468
|
763.768
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.363
|
-3.710
|
-1.331
|
-1.029
|
1.545
|
— |
1.325
|
-1.307
|
— | — | — | — | — |
No JSON data available for plots.