Hg_chrom8_TN10mRNA_15291
Organism: Heterodera glycines Gene Locus: chr8:3815588-3817695 Feature type: polypeptideProtein Sequence
Length: 162
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.148 | 0.574 | 1.122 | 0.213 | 2.16 | 1.266 | 1.176 | 0.617 | 0.96 | 1.502 | 1.496 | 1.452 | 0.857 | 0.475 | 1.008 | 0.265 | 0.506 | 0.748 | 0.95 | 0.726 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14438
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.298
|
0.257
|
0.035
|
0.595
|
0.195
|
0.108
|
0.138
|
0.046
|
0.300
|
0.205
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011826
|
1.000
|
1.000
|
Hsc_gene_3173.t1
|
Hsc_gene_3173.t1
|
— |
P53014.1 Myosin, essential light chain [Caenorhabditis elegans]
|
KAI3416152.1 Myosin, essential light chain [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0005575_0.814|GO:0110165_0.813|GO:0008150_0.805|GO:0005622_0.773|GO:0043226_0.657|GO:0043229_0.649|GO:0005737_0.628|GO:0003674_0.595|GO:0043228_0.532|GO:0043232_0.532|GO:0009987_0.531
|
IPR002048+2-37_78-113_82-136+|IPR011992+6-137+|IPR050230+3-138+
|
— | — |
G3DSA:1.10.238.10:FF:000001+3-144+Calmodulin_1
|
PTHR23048+3-138+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
149-162
|
1.000
|
1-148
|
6so3_C
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.786
|
18152.640
|
4.761
|
-6.000
|
35.185
|
8.025
|
47.531
|
52.469
|
16.049
|
19.136
|
41.358
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
9714.348
|
8017.596
|
14873.671
|
4713.731
|
2806.305
|
13221.733
|
1595.452
|
34220.977
|
2104.644
|
11128.242
|
7260.986
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.662
|
-0.904
|
-1.549
|
-0.780
|
2.250
|
-3.040
|
1.268
|
-4.280
|
-2.513
|
— | — | — | — |
No JSON data available for plots.