Hg_chrom8_TN10mRNA_15292
Organism: Heterodera glycines Gene Locus: chr8:3817725-3819556 Feature type: polypeptideProtein Sequence
Length: 264
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.705 | 1.057 | 0.689 | 0.392 | 0.884 | 0.583 | 0.496 | 0.947 | 1.094 | 2.15 | 0.918 | 0.223 | 1.894 | 1.166 | 1.623 | 0.866 | 0.621 | 1.32 | 0.874 | 0.891 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14439
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.454
|
0.122
|
0.037
|
0.139
|
0.720
|
0.049
|
0.090
|
0.018
|
0.070
|
0.020
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011827
|
1.000
|
1.000
|
Hsc_gene_3174.t1
|
Hsc_gene_3174.t1
|
— |
Q18484.1 Thioredoxin-related transmembrane protein 2 homolog [Caenorhabditis elegans]
|
KAF7639919.1 Thioredoxin domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.884|GO:0110165_0.881|GO:0008150_0.829|GO:0005622_0.778|GO:0016020_0.745|GO:0003674_0.739|GO:0005737_0.737|GO:0043226_0.667|GO:0043229_0.647|GO:0043227_0.632|GO:0043231_0.623|GO:0003824_0.607|GO:0071944_0.591|GO:0005886_0.583|GO:0016491_0.558|GO:0016667_0.552|GO:0009987_0.531
|
IPR013766+110-246_132-219+|IPR036249+124-220+
|
— |
PF00085+132-219+Thioredoxin
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
260-264
|
1.000
|
1-259
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.717
|
30311.630
|
10.315
|
15.500
|
25.000
|
12.879
|
41.667
|
58.333
|
15.909
|
9.091
|
44.318
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
yellow
|
571.014
|
497.656
|
401.760
|
402.383
|
568.556
|
464.059
|
1003.569
|
475.399
|
417.731
|
754.870
|
610.382
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.539
|
-0.444
|
— |
0.467
|
-0.279
|
1.123
|
— |
1.221
|
— | — | — | — | — |
No JSON data available for plots.