Hg_chrom8_TN10mRNA_15293
Organism: Heterodera glycines Gene Locus: chr8:3820021-3821790 Feature type: polypeptideProtein Sequence
Length: 219
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.265 | 1.168 | 1.162 | 1.102 | 1.218 | 1.522 | 1.359 | 0.685 | 0.812 | 0.802 | 0.553 | 2.149 | 1.776 | 1.229 | 1.305 | 1.109 | 0.749 | 0.83 | 1.405 | 0.403 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14440
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.907
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.416
|
0.239
|
0.030
|
0.246
|
0.835
|
0.265
|
0.388
|
0.049
|
0.058
|
0.040
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002478
|
3.000
|
1.000
|
Hsc_gene_3175.t1
|
Hsc_gene_3175.t1
|
— |
Q91YT2.1 E3 ubiquitin-protein ligase RNF185 [Mus musculus]
|
KAH7731558.1 ring finger protein 5 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005783|GO:0006511|GO:0046872|GO:0061630
|
GO:0005575_0.901|GO:0110165_0.901|GO:0008150_0.823|GO:0016020_0.814|GO:0003674_0.782|GO:0005622_0.766|GO:0043226_0.730|GO:0009987_0.710|GO:0043229_0.703|GO:0043227_0.692|GO:0043231_0.677|GO:0005737_0.611|GO:0008152_0.567|GO:0043170_0.557|GO:0044238_0.555|GO:0071944_0.526|GO:0005886_0.518|GO:0003824_0.517
|
IPR001841+56-96_56-97+|IPR013083+14-109+|IPR017907+71-80+|IPR018957+56-96+|IPR045103+20-137+
|
SM00184+56-96+
|
PF00097+56-96+Zinc_finger,_C3HC4_type_(RING_finger)
|
G3DSA:3.30.40.10:FF:000062+41-110+E3_ubiquitin-protein_ligase_RNF185
|
PTHR12313+20-137+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-55
|
1.000
|
56-219
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.739
|
24504.400
|
4.715
|
-6.500
|
25.114
|
10.959
|
48.402
|
51.598
|
11.416
|
13.699
|
52.511
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
794.665
|
778.963
|
809.179
|
590.746
|
597.650
|
649.226
|
1011.476
|
915.305
|
731.001
|
921.206
|
839.689
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.174
|
-0.536
|
-0.346
|
— | — |
0.650
|
0.393
|
0.286
|
— | — | — | — | — |
No JSON data available for plots.