SCN Proteipedia

Hg_chrom8_TN10mRNA_15294

Organism: Heterodera glycines Gene Locus: chr8:3822429-3825441 Feature type: polypeptide

Protein Sequence

Length: 423

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.66	0.825	1.204	0.897	0.985	1.152	0.563	1.655	1.524	1.086	1.039	1.113	1.313	0.636	1.158	1.452	0.853	1.003	2.182	0.278	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14441	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	3-Not_Clustered	0.901

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.505	0.095	0.003	0.461	0.147	0.188	0.180	0.009	0.096	0.015

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011828	1.000	1.000	Hsc_gene_3176.t1	Hsc_gene_3176.t1;Hsc_gene_3176.t2	—	A8XZJ9.2 Lissencephaly-1 homolog [Caenorhabditis briggsae]	KAI1721444.1 WD domain, g-beta repeat domain-containing protein [Ditylenchus destructor]	No	-0.220

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0008150_0.903\|GO:0005575_0.885\|GO:0110165_0.879\|GO:0005622_0.812\|GO:0009987_0.787\|GO:0005737_0.636\|GO:0043226_0.623\|GO:0043229_0.608\|GO:0003674_0.606\|GO:0032502_0.557\|GO:0048856_0.557\|GO:0016020_0.551\|GO:0005488_0.533\|GO:0032501_0.531\|GO:0065007_0.520\|GO:0051179_0.511\|GO:0050789_0.507	IPR001680+100-139_106-139_107-148_142-181_144-181_149-181_185-224_187-224_192-233_227-266_228-265_234-265_269-337_323-346_340-379_341-379_347-388_382-421_384-420_389-423+\|IPR006594+8-40_10-36+\|IPR015943+104-423+\|IPR017252+1-422_2-421+\|IPR019775+126-140_211-225_408-422+\|IPR020472+126-140_168-182_211-225+\|IPR036322+97-420+\|IPR037190+5-77+	SM00320+100-139_142-181_185-224_227-266_269-337_340-379_382-421+\|SM00667+8-40+	PF00400+106-139_144-181_187-224_228-265_341-379_384-420+WD_domain,_G-beta_repeat\|PF08513+10-36+LisH	—	PTHR19848+106-197+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-1	1.000	2-423	7mt1_A	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.680	48094.800	7.457	7.000	28.369	11.820	51.773	48.227	15.839	12.530	48.463

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	orange	2603.860	2752.369	5016.767	2053.078	1782.745	2277.631	2510.941	3130.451	3037.870	1791.993	2325.941

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.638	-0.560	-1.182	-0.235	0.368	0.151	0.355	—	—	—	—	—	—

No JSON data available for plots.

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