Hg_chrom8_TN10mRNA_15295
Organism: Heterodera glycines Gene Locus: chr8:3827120-3828975 Feature type: polypeptideProtein Sequence
Length: 190
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.367 | 0.979 | 1.244 | 0.363 | 2.018 | 1.35 | 0.564 | 0.526 | 1.053 | 0.925 | 1.595 | 1.238 | 1.023 | 0.607 | 1.719 | 0.902 | 0.431 | 1.276 | 1.215 | 0.929 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14442
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
PVTKRRV,KRNKIRRRMEEQRERRA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.077
|
0.979
|
0.043
|
0.144
|
0.013
|
0.009
|
0.010
|
0.022
|
0.031
|
0.013
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004716
|
1.000
|
2.000
|
Hsc_gene_3177.t1;Hsc_gene_3177.t2
|
Hsc_gene_3177.t1
|
— | — |
KHJ91542.1 ribonuclease P/MRP protein subunit POP1 [Oesophagostomum dentatum]
|
No
|
0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005763
|
GO:0005575_0.924|GO:0110165_0.920|GO:0005622_0.889|GO:0016020_0.848|GO:0043226_0.848|GO:0043229_0.830|GO:0005737_0.814|GO:0043227_0.779|GO:0043231_0.761|GO:0005739_0.565|GO:0032991_0.561|GO:0043228_0.539|GO:0043232_0.539
|
IPR012340+8-121_34-121+|IPR039193+9-132+
|
— | — | — |
PTHR24088+9-132+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
139-190
|
1.000
|
1-138
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.559
|
22462.440
|
7.142
|
1.000
|
38.947
|
9.474
|
57.368
|
42.632
|
20.000
|
18.947
|
40.526
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
1631.594
|
3441.863
|
2495.929
|
1079.540
|
1118.094
|
1159.420
|
1111.208
|
1753.651
|
2205.785
|
923.996
|
1473.334
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.693
|
-1.810
|
-1.100
|
— | — | — |
0.492
|
-0.515
|
— | — | — | — | — |
No JSON data available for plots.