SCN Proteipedia

Hg_chrom8_TN10mRNA_15297

Organism: Heterodera glycines Gene Locus: chr8:3832790-3837489 Feature type: polypeptide

Protein Sequence

Length: 897

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.843	0.726	0.709	0.615	1.059	1.372	0.743	1.728	0.991	1.145	0.794	1.705	1.394	1.286	1.911	0.892	0.859	0.946	1.201	0.328	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14444	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_described	0.998

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	LGEV,RKWRRRPTRMLKRWVR,RRRPTRMLKRWVREQRK,RKKAPSRKWRRRPTRMLKR,KERRRKARNLSKRAKKRTKMARKKSG	48-68	0.999	38-78	0.989	—	—	0.000	—	—	0.684	0.096	0.011	0.390	0.169	0.010	0.011	0.097	0.065	0.009

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011829	1.000	1.000	Hsc_gene_3181.t1	—	—	Q11188.2 Ribonucleases P/MRP protein subunit popl-1 [Caenorhabditis elegans]	KAI1730773.1 ribonucleases p/MRP protein subunit POP1 domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000172\|GO:0001682\|GO:0005655	GO:0008150_0.953\|GO:0009987_0.908\|GO:0008152_0.820\|GO:0009058_0.813\|GO:0044238_0.808\|GO:0044237_0.802\|GO:0005575_0.801\|GO:0110165_0.801\|GO:0043170_0.797\|GO:0044249_0.795\|GO:0009059_0.773\|GO:0010467_0.765\|GO:0003674_0.763\|GO:0006139_0.762\|GO:0034654_0.743\|GO:0090304_0.740\|GO:0016070_0.739\|GO:0141187_0.733\|GO:0016020_0.730\|GO:0032774_0.729\|GO:0005622_0.719\|GO:0043226_0.699\|GO:0043229_0.695\|GO:0005488_0.688\|GO:0006396_0.682\|GO:0043227_0.642\|GO:0043231_0.633\|GO:0097159_0.633\|GO:0003676_0.601\|GO:0003723_0.554\|GO:0005634_0.542\|GO:0006399_0.536\|GO:0008033_0.536\|GO:0043228_0.535\|GO:0043232_0.535\|GO:0032991_0.523	IPR009723+48-97_86-168+\|IPR012590+473-565+\|IPR039182+8-892+	—	PF06978+48-97_86-168+Ribonucleases_P/MRP_protein_subunit_POP1,_N-terminal\|PF08170+473-565+POPLD_(NUC188)_domain\|PF22770+784-889+POP1_C-terminal_domain	—	PTHR22731+8-892+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-101;673-830	2.000	102-672;831-897	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.791	102017.370	10.450	54.500	28.317	11.148	48.272	51.728	18.060	10.256	46.711

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	brown	1262.883	2389.577	1583.609	1436.926	1555.055	1208.428	1594.682	1060.444	924.878	770.683	836.766

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.824	-0.871	—	—	-0.349	0.411	-0.294	0.732	—	—	—	—	—

No JSON data available for plots.

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