Hg_chrom8_TN10mRNA_15299
Organism: Heterodera glycines Gene Locus: chr8:3840782-3842877 Feature type: polypeptideProtein Sequence
Length: 274
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.019 | 1.188 | 1.792 | 0.0 | 2.494 | 0.749 | 0.652 | 0.73 | 0.73 | 1.036 | 1.77 | 1.503 | 0.608 | 0.281 | 1.192 | 0.678 | 0.897 | 0.553 | 1.123 | 0.429 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14446
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRSRTEAAEEEKRERL,KKSNAAEERKRRWAAKK,KRVRFTEERNATERVKRSR,KRLNNEKKSNAAEERKRRW
|
— | — | — | — | — | — |
0.000
|
— | — |
0.922
|
0.095
|
0.025
|
0.235
|
0.053
|
0.032
|
0.067
|
0.006
|
0.025
|
0.064
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011830
|
1.000
|
1.000
|
Hsc_gene_3184.t1
|
Hsc_gene_3184.t1
|
— |
Q9VKV5.1 CD2 antigen cytoplasmic tail-binding protein 2 homolog [Drosophila melanogaster]
|
KAI1729121.1 CD2 antigen cytoplasmic tail-binding protein 2 like protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005682
|
GO:0005575_0.912|GO:0110165_0.910|GO:0005622_0.889|GO:0043226_0.829|GO:0016020_0.819|GO:0043229_0.805|GO:0043227_0.754|GO:0043231_0.726|GO:0005634_0.695|GO:0008150_0.551
|
IPR039905+2-273+
|
— | — | — |
PTHR13138+2-273+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-111;183-226;263-274
|
2.000
|
112-182;227-262
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.907
|
31374.580
|
4.540
|
-18.000
|
43.796
|
6.569
|
62.044
|
37.956
|
18.978
|
24.818
|
44.526
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
yellow
|
1223.241
|
1688.203
|
1029.792
|
892.354
|
1080.949
|
1456.560
|
1504.056
|
1426.954
|
1373.539
|
916.948
|
1112.630
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.943
|
-1.057
|
— |
0.244
|
0.445
|
— | — |
0.219
|
— | — | — | — | — |
No JSON data available for plots.