Hg_chrom8_TN10mRNA_15300
Organism: Heterodera glycines Gene Locus: chr8:3842906-3845606 Feature type: polypeptideProtein Sequence
Length: 360
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.001 | 1.098 | 0.606 | 2.011 | 0.37 | 3.348 | 1.058 | 2.083 | 0.988 | 0.976 | 0.589 | 2.288 | 0.231 | 1.229 | 0.964 | 0.952 | 0.546 | 0.884 | 0.427 | 0.408 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14447
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.972
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRKL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.819
|
0.133
|
0.005
|
0.482
|
0.055
|
0.021
|
0.021
|
0.023
|
0.050
|
0.099
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011831
|
1.000
|
1.000
|
Hsc_gene_3185.t1
|
— | — |
Q09472.2 Histone acetyltransferase p300 [Homo sapiens]
|
KAI3416168.1 protein of unknown function (DUF902) [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004402|GO:0006355
|
GO:0008150_0.957|GO:0065007_0.925|GO:0050789_0.917|GO:0009987_0.908|GO:0050794_0.908|GO:0005575_0.906|GO:0110165_0.895|GO:0003674_0.867|GO:0050896_0.855|GO:0032501_0.853|GO:0032502_0.848|GO:0048856_0.848|GO:0005488_0.843|GO:0048518_0.822|GO:0048522_0.810|GO:0008152_0.804|GO:0019222_0.804|GO:0005622_0.803|GO:0005515_0.798|GO:0016020_0.797|GO:0031323_0.797|GO:0044237_0.797|GO:0043170_0.793|GO:0060255_0.793|GO:0044238_0.791|GO:0080090_0.791|GO:0009058_0.774|GO:0009889_0.774|GO:0009059_0.769|GO:0010556_0.769|GO:0031326_0.769|GO:0044249_0.769|GO:0010467_0.768|GO:0010468_0.765|GO:0009893_0.759|GO:0016043_0.755|GO:0071840_0.755|GO:0010604_0.753|GO:0031325_0.753|GO:0009891_0.750|GO:0043226_0.746|GO:0031328_0.745|GO:0006139_0.742|GO:0019219_0.742|GO:0016070_0.741|GO:0034654_0.741|GO:0051252_0.741|GO:0090304_0.741|GO:0006351_0.740|GO:0006355_0.740|GO:0032774_0.740|GO:0141187_0.740|GO:2001141_0.740|GO:0043229_0.737|GO:0010557_0.734|GO:0043227_0.720|GO:0045935_0.718|GO:0051254_0.717|GO:0006366_0.710|GO:0006357_0.709|GO:0045893_0.709|GO:1902680_0.709|GO:0003824_0.696|GO:0043231_0.696|GO:0045944_0.696|GO:0140096_0.696|GO:0016740_0.681|GO:0007275_0.679|GO:0006325_0.676|GO:0006338_0.676|GO:0016746_0.671|GO:0008134_0.658|GO:0140297_0.658|GO:0016747_0.654|GO:0004402_0.650|GO:0008080_0.650|GO:0016407_0.650|GO:0016410_0.650|GO:0034212_0.650|GO:0061733_0.650|GO:0140993_0.650|GO:0005634_0.641|GO:0006950_0.594|GO:0051716_0.538|GO:0007154_0.535|GO:0023052_0.534|GO:0048731_0.522|GO:0061629_0.521|GO:0030154_0.514|GO:0048869_0.514|GO:0007165_0.513|GO:0032991_0.503
|
IPR000197+41-129_42-129_48-126_209-297_210-297_216-294+|IPR013178+163-308+|IPR035898+33-132_40-127_202-302_209-301+
|
SM00551+42-129_210-297+
|
PF02135+48-126_216-294+TAZ_zinc_finger
|
— |
PTHR13808+163-308+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-40;159-206
|
2.000
|
41-158;207-360
|
5hou_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.929
|
38933.500
|
8.465
|
18.500
|
18.333
|
6.944
|
46.111
|
53.889
|
12.778
|
5.556
|
53.611
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1064.243
|
911.351
|
713.616
|
837.717
|
943.722
|
882.578
|
1147.136
|
1003.604
|
1340.928
|
1235.468
|
1280.665
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.581
|
-0.259
|
0.339
|
0.140
|
— |
0.389
|
— |
0.335
|
— | — | — | — | — |
No JSON data available for plots.