Hg_chrom8_TN10mRNA_15301
Organism: Heterodera glycines Gene Locus: chr8:3846755-3848486 Feature type: polypeptideProtein Sequence
Length: 201
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.62 | 1.504 | 1.176 | 0.172 | 1.327 | 1.403 | 0.355 | 0.498 | 0.332 | 1.277 | 1.432 | 3.219 | 0.553 | 0.191 | 1.218 | 1.137 | 0.897 | 0.98 | 0.0 | 0.146 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14448
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KKGNREVAQVHAENSIRKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.221
|
0.240
|
0.049
|
0.451
|
0.088
|
0.340
|
0.217
|
0.042
|
0.246
|
0.220
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011832
|
1.000
|
1.000
|
Hsc_gene_3186.t1
|
Hsc_gene_3186.t1
|
— |
Q7LBR1.1 Charged multivesicular body protein 1b [Homo sapiens]
|
KAI3422597.1 Charged multivesicular body protein 1b [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007034
|
GO:0008150_0.926|GO:0005575_0.846|GO:0110165_0.844|GO:0005622_0.809|GO:0009987_0.786|GO:0016020_0.767|GO:0043226_0.752|GO:0043229_0.749|GO:0043227_0.694|GO:0043231_0.669|GO:0051179_0.658|GO:0051234_0.646|GO:0006810_0.638|GO:0005737_0.602|GO:0016192_0.598|GO:0032502_0.588|GO:0048856_0.588|GO:0071985_0.577|GO:0051641_0.544|GO:0051649_0.529|GO:0046907_0.517
|
IPR005024+5-200_11-170+
|
— |
PF03357+11-170+Snf7
|
— |
PTHR10476+5-200+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-59;111-201
|
1.000
|
60-110
|
6tz9_AA
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.630
|
22165.170
|
8.926
|
3.000
|
30.846
|
3.483
|
56.219
|
43.781
|
16.418
|
14.428
|
51.244
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1787.614
|
2632.264
|
1474.577
|
1354.446
|
1636.270
|
1572.291
|
1198.916
|
2004.003
|
1148.417
|
2507.213
|
1924.871
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.065
|
-1.096
|
— |
0.241
|
— |
-0.380
|
— |
-0.599
|
— | — | — | — | — |
No JSON data available for plots.