Hg_chrom8_TN10mRNA_15304
Organism: Heterodera glycines Gene Locus: chr8:3858346-3859162 Feature type: polypeptideProtein Sequence
Length: 136
(Signal peptide: 1-41)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.684 | 1.026 | 0.267 | 2.282 | 0.613 | 0.754 | 0.788 | 0.368 | 0.654 | 1.789 | 0.446 | 0.433 | 2.247 | 1.273 | 1.2 | 1.366 | 0.241 | 2.005 | 1.131 | 0.433 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14451
|
— | — |
0.889
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — | — | — | — | — |
1-41
|
0.680
|
0.861
|
1.000
|
1.000
|
0.126
|
0.030
|
0.046
|
0.179
|
0.230
|
0.761
|
0.161
|
0.018
|
0.735
|
0.224
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011834
|
1.000
|
1.000
|
Hsc_gene_3190.t1
|
Hsc_gene_3190.t1
|
— |
Q9XWU2.1 Protein SUP-1 [Caenorhabditis elegans]
|
MCP9263583.1 Protein SUP-1 [Dirofilaria immitis]
|
No
|
0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.920|GO:0110165_0.918|GO:0071944_0.885|GO:0005886_0.876|GO:0016020_0.876|GO:0030054_0.594|GO:0045202_0.577|GO:0098590_0.572|GO:0042995_0.559|GO:0120025_0.559|GO:0043005_0.553|GO:0036477_0.551|GO:0044297_0.551|GO:0043025_0.548|GO:0032809_0.540|GO:0044298_0.540
|
IPR022559+25-135_81-117+
|
— |
PF10853+81-117+Protein_of_unknown_function_(DUF2650)
|
— |
PTHR34149+25-135+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-136
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.920
|
14931.680
|
8.415
|
5.500
|
14.706
|
11.765
|
33.088
|
66.912
|
9.559
|
5.147
|
55.882
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
magenta
|
237.360
|
70.897
|
959.061
|
375.207
|
80.432
|
72.962
|
66.162
|
693.211
|
18.950
|
155.011
|
96.699
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.530
|
2.267
|
-1.246
|
-2.254
|
— | — |
3.151
|
-3.249
|
— | — | — | — | — |